Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0779.Seq
(435 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 41 4e-04
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 41 5e-04
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 38 0.003
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 37 0.006
01_06_0631 + 30732091-30732292,30732690-30732870,30732994-307331... 34 0.044
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 33 0.10
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042... 32 0.18
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 31 0.31
05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664... 29 1.6
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 29 1.6
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 1.6
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225... 29 1.6
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 28 2.9
01_01_0255 + 2079112-2079196,2079334-2079514,2079712-2079853,207... 28 3.8
11_06_0533 + 24734177-24735787 27 5.0
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 5.0
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 27 6.6
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639... 27 8.7
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566... 27 8.7
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 41.1 bits (92), Expect = 4e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N AL+ R + L DL L V LW L+ VG+C + +TLI + + L T+P Y+
Sbjct: 166 INRALHLFREIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVPILYD 223
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 40.7 bits (91), Expect = 5e-04
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N A LR++ L D+ L LW L+ +G+C N +TL+ + ++ L T+P YE
Sbjct: 180 INRAFANLRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVPILYE 237
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N LR + DL L V LW L+ +G+C N +TL + ++ L+T+P YE
Sbjct: 152 INRGFATLREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVPVLYE 209
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 37.1 bits (82), Expect = 0.006
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 258
+N AL+ LR + L DL+ L V LW L+ +G+ + +TL + + L T+P Y
Sbjct: 130 INQALHLLREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVPILY 186
>01_06_0631 +
30732091-30732292,30732690-30732870,30732994-30733135,
30733228-30733297,30733383-30733549
Length = 253
Score = 34.3 bits (75), Expect = 0.044
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N LR + DL L LW L+ +G+ N +TL + ++AL+T+P YE
Sbjct: 154 INRGFATLREIGHGRDLKKFLIVIAGLWILSVLGSSCNFLTLFYIVFVALYTVPVLYE 211
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 33.1 bits (72), Expect = 0.10
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 356 VLLWCLTYVGACFNGITLIILGWIALFTLPKAY 258
+LLW L+ +G + ITL G IAL T+P Y
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIPALY 188
>05_07_0022 -
27103367-27103533,27103783-27103852,27104074-27104215,
27104372-27104552,27104654-27104756
Length = 220
Score = 32.3 bits (70), Expect = 0.18
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -2
Query: 434 AHLNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
AH +A LY++ ++L L LW L +G + TL+ +G++ TLP YE
Sbjct: 122 AHFSAVLYDIS---CGKELRKFLAVIGSLWILAVIGETCSFTTLLYVGFLCALTLPALYE 178
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 31.5 bits (68), Expect = 0.31
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 350 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
LW +G N +T+I +G+++ TLP YE
Sbjct: 208 LWAAAVIGGWCNFLTVIYIGFVSAHTLPVLYE 239
>05_02_0105 +
6644264-6644344,6645573-6646097,6646185-6646410,
6646498-6646875,6647035-6647417,6647513-6648130
Length = 736
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 303 HHPRLDSAVHAAEGLRVNKAQVDANLELARAKINEITA 190
HH + +A++ GLRVN++QV + L + K + I A
Sbjct: 465 HHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICA 502
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 303 HHPRLDSAVHAAEGLRVNKAQVDANLELARAKINEITA 190
HH + +A++ GLRVN++QV + L + K + I A
Sbjct: 885 HHQQCATALNDKLGLRVNRSQVHWHFRLCKEKCSWICA 922
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 1.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 362 FGVLLWCLTYVGACFNGITLIILGW 288
FG+ WC+ Y G NG T+ W
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLW 316
>03_01_0291 -
2250349-2250966,2251062-2251444,2251604-2251981,
2252147-2252294,2252382-2252906,2253990-2254112,
2254151-2254205,2254510-2254640
Length = 786
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -1
Query: 303 HHPRLDSAVHAAEGLRVNKAQVDANLELARAKINEITA 190
HH + +A++ GLRVN++QV + L + K + I A
Sbjct: 515 HHQQCATALNDKLGLRVNRSQVHRHFRLCKEKWSWICA 552
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 368 LKFGVLLWCLTYVGACFNGITLIIL 294
+K ++LW ++Y+G FN +TLI +
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYI 148
>01_01_0255 +
2079112-2079196,2079334-2079514,2079712-2079853,
2079934-2080003,2080140-2080303
Length = 213
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 350 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
L+ + + +CF+ +TL+ L + TLP YE
Sbjct: 141 LFIASVIASCFSSLTLLYLVVLGTMTLPVMYE 172
>11_06_0533 + 24734177-24735787
Length = 536
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 291 LDSAVHAAEGLRVNKAQVDANLELARAKINEITAKV 184
L +A AE LR A++D +A AK+NE+ ++
Sbjct: 314 LAAAKTEAEKLRSEVAEIDEKHRMAEAKVNELQIEI 349
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 288 DSAVHAAEGLRVNKAQVDANLELARAKINEITAKVRAAVPL-GRRAEGDKD 139
+ AV A + R+ V+ N+EL + + E+ AVP+ G + D +
Sbjct: 426 EEAVEANKASRLESEGVEVNVELQKEEATEVNEARSQAVPIVGNHVDDDNE 476
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 318 EARPHVREAPQQHAELXRVHQ 380
E RP RE PQ+HA + +H+
Sbjct: 465 ERRPITRETPQKHANVVALHR 485
>07_02_0006 -
11663297-11663308,11663587-11663783,11663860-11663948,
11664087-11664166,11664747-11664851,11664951-11665031,
11665135-11665218,11665352-11665449,11666203-11666297,
11666380-11666453,11666549-11666826,11666920-11667190
Length = 487
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 276 EQRYPTEDDERDPVEARPHVREAPQQHAELXRVHQVLH--QEQSAQLIQGG 422
++++P+E+DE PV A + EL H+ +EQS + GG
Sbjct: 419 DEQFPSEEDEEAPVNAEDCLVPYDSDAQELGLFHETEEEFEEQSVRADLGG 469
>06_01_0757 +
5659081-5659605,5659694-5659919,5659994-5660333,
5660677-5661025,5661121-5661723
Length = 680
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 303 HHPRLDSAVHAAEGLRVNKAQVDANLELARAKINEITA 190
HH + A+ G+RV K+QV +L L + K + I A
Sbjct: 414 HHQQCAIALKDKFGIRVTKSQVHRHLRLCKEKWSWICA 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,611,509
Number of Sequences: 37544
Number of extensions: 105884
Number of successful extensions: 391
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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