Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0779.Seq
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             67   7e-12
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             36   0.019
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  28   2.9  
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)                     27   5.0  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   27   6.7  
SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)                     27   6.7  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 66.9 bits (156), Expect = 7e-12
 Identities = 30/51 (58%), Positives = 41/51 (80%)
 Frame = -2

Query: 407 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
           +RRLFLVEDL DS+K  V+L+ L+Y+   F+GITL  +G+I LFT+PKAY+
Sbjct: 33  VRRLFLVEDLADSIKLLVVLYILSYLAQWFSGITLTFIGFIGLFTVPKAYD 83


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -2

Query: 431 HLNAALYELRRLFLVEDLVDSLK 363
           H+N     LRRLFLVED+VDS+K
Sbjct: 466 HINCLTKSLRRLFLVEDIVDSIK 488


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 297 DDERDPVEARPHVREAPQQHAELXRVHQVLHQEQS 401
           DD  +  E R   R   ++H ++  VH  LH EQS
Sbjct: 151 DDGWEGKEVRKEARRQEEEHRKVTVVHSKLHPEQS 185


>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 324 RPHVREAPQQHAELXRVHQVLHQEQS 401
           RPH+R A QQ + + + H  LH++ +
Sbjct: 169 RPHIRLASQQWSAVQQFHDYLHEDDN 194


>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 968

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 327 PHVREAPQQHAELXRVHQVLHQEQSAQ 407
           PHVR+  Q    + R HQ LHQ + A+
Sbjct: 560 PHVRQGHQHPQRVPRRHQDLHQVRCAR 586


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 123 RAVIY*LHYYFTCKAL*ESCGDYCICFL 40
           RA+   LHY+  C      CG  C+C L
Sbjct: 339 RAIGVLLHYFLLCCLFWVGCGGLCLCRL 366


>SB_1675| Best HMM Match : ig (HMM E-Value=5.6e-05)
          Length = 964

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 123 RAVIY*LHYYFTCKAL*ESCGDYCICFL 40
           RA+   LHY+  C      CG  C+C L
Sbjct: 826 RAIGVLLHYFLLCCLFWVGCGGLCLCRL 853


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 306  AHHPRLDSAVHAAEGLRVNKAQVDANLELAR 214
            AH P++D  V  A  L V+  QVD  +E AR
Sbjct: 1674 AHTPQVDRLVECARLLVVHTPQVDRLVEYAR 1704



 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 303  HHPRLDSAVHAAEGLRVNKAQVDANLELARAKINEITAKVRAAVPLGR 160
            H P++D  V  A  L V+  QVD  ++  RA +  + A+V   V  GR
Sbjct: 1896 HTPQVDRLVECARLLVVHTPQVDRLVQYGRALL-ALIAQVGRLVEYGR 1942


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,702,329
Number of Sequences: 59808
Number of extensions: 117217
Number of successful extensions: 346
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)