Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0779.Seq
(435 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 42 2e-04
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 42 2e-04
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 40 5e-04
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 40 7e-04
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 37 0.005
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 36 0.009
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 36 0.009
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 36 0.012
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 36 0.012
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 36 0.012
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 36 0.016
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 36 0.016
At3g10915.2 68416.m01315 reticulon family protein low similarity... 28 3.1
At3g10915.1 68416.m01314 reticulon family protein low similarity... 28 3.1
At1g08630.3 68414.m00958 L-allo-threonine aldolase-related simil... 27 5.5
At1g08630.2 68414.m00957 L-allo-threonine aldolase-related simil... 27 5.5
At1g08630.1 68414.m00956 L-allo-threonine aldolase-related simil... 27 5.5
At3g18480.1 68416.m02348 CCAAT displacement protein-related / CD... 27 7.2
At3g60600.1 68416.m06781 vesicle-associated membrane protein, pu... 26 9.5
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
LN A LR + L DL L V LW ++ VG FN +TL+ + ++ L T+P YE
Sbjct: 154 LNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYE 211
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N LR + DL L LW L+ +G CFN +TL + + LFT+P AY+
Sbjct: 175 INRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYD 232
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 40.3 bits (90), Expect = 5e-04
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
LN A LR + L DL L LW ++ VG FN +TL+ + ++ L T+P YE
Sbjct: 154 LNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYE 211
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 39.9 bits (89), Expect = 7e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N L LR + +D+ + LW L+ +G+C+N +TL + LFT+P YE
Sbjct: 154 INRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYE 211
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N + LR + D+ L LW L+ +G C++ +TL + + LFT+P Y+
Sbjct: 171 INRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYD 228
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 36.3 bits (80), Expect = 0.009
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -2
Query: 368 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
L+ ++LW ++YVG N +TL+ +G + + P YE
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYE 165
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 36.3 bits (80), Expect = 0.009
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N LR + DL L LW L+ VG+ N +TLI + + LFT+P YE
Sbjct: 150 INRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYE 207
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N L L+ L +L L + LW VG+C N +T++ +G++ T+P YE
Sbjct: 167 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 224
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N L L+ L +L L + LW VG+C N +T++ +G++ T+P YE
Sbjct: 147 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 204
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 35.9 bits (79), Expect = 0.012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N L L+ L +L L + LW VG+C N +T++ +G++ T+P YE
Sbjct: 147 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 204
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 35.5 bits (78), Expect = 0.016
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
LN A LR + L D+ + + + LW ++ +G F+ ++L+ + ++ + T+P YE
Sbjct: 151 LNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYE 208
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 35.5 bits (78), Expect = 0.016
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = -2
Query: 428 LNAALYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 255
+N L R +++ + + V+LW +++VG N +T++ LG + +P YE
Sbjct: 100 INTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYE 157
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 365 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 258
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 183
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 365 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 258
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 142 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 177
>At1g08630.3 68414.m00958 L-allo-threonine aldolase-related similar
to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA)
(L-allo-threonine acetaldehyde-lyase) (SP:O07051)
{Aeromonas jandaei}; similar to ESTs gb|R30517,
gb|T42772, gb|R90493, and gb|R90493
Length = 358
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 321 LQRDHAHHPRLDSAVHAAEGLRVNKAQVDANL 226
LQ DH L ++ +G+RVN A V+ N+
Sbjct: 259 LQHDHKKAKLLAEGLNQMKGIRVNVAAVETNM 290
>At1g08630.2 68414.m00957 L-allo-threonine aldolase-related similar
to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA)
(L-allo-threonine acetaldehyde-lyase) (SP:O07051)
{Aeromonas jandaei}; similar to ESTs gb|R30517,
gb|T42772, gb|R90493, and gb|R90493
Length = 358
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 321 LQRDHAHHPRLDSAVHAAEGLRVNKAQVDANL 226
LQ DH L ++ +G+RVN A V+ N+
Sbjct: 259 LQHDHKKAKLLAEGLNQMKGIRVNVAAVETNM 290
>At1g08630.1 68414.m00956 L-allo-threonine aldolase-related similar
to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA)
(L-allo-threonine acetaldehyde-lyase) (SP:O07051)
{Aeromonas jandaei}; similar to ESTs gb|R30517,
gb|T42772, gb|R90493, and gb|R90493
Length = 358
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 321 LQRDHAHHPRLDSAVHAAEGLRVNKAQVDANL 226
LQ DH L ++ +G+RVN A V+ N+
Sbjct: 259 LQHDHKKAKLLAEGLNQMKGIRVNVAAVETNM 290
>At3g18480.1 68416.m02348 CCAAT displacement protein-related /
CDP-related similar to CCAAT displacement protein (CDP)
(Cut-like 1) (Swiss-Prot:P39880) [Homo sapiens];
contains Pfam:PF00904 Involucrin repeat
Length = 689
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 276 HAAEGLRVNKAQVDANLELARAKINEITAKVRAAVPLGRRAEGD 145
H L+V ++ + LE A AK E+TAKV L ++ E D
Sbjct: 421 HEVTQLKVQLSEKASLLEKAEAKGEELTAKVNEQQRLIQKLEDD 464
>At3g60600.1 68416.m06781 vesicle-associated membrane protein,
putative / VAMP, putative similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 256
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 252 NKAQVDANLELARAKINEITAKVRAAVPLGRRAEGDKDK 136
NKA N ARA I ++T + ++A+ L R + + D+
Sbjct: 183 NKAGHQENTSEARALITKLTEEKQSAIQLNNRLQRELDQ 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,902,442
Number of Sequences: 28952
Number of extensions: 79214
Number of successful extensions: 270
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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