Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0778.Seq
(434 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q99LT6 Cluster: Eef2 protein; n=26; Eukaryota|Rep: Eef2... 131 5e-30
UniRef50_P13639 Cluster: Elongation factor 2; n=491; Eukaryota|R... 131 7e-30
UniRef50_A6RAK0 Cluster: Putative uncharacterized protein; n=1; ... 107 1e-22
UniRef50_A6SB62 Cluster: Putative uncharacterized protein; n=1; ... 101 5e-21
UniRef50_Q7R0C7 Cluster: GLP_608_18578_21274; n=2; Giardia intes... 72 5e-12
UniRef50_A0DDX4 Cluster: Chromosome undetermined scaffold_47, wh... 69 3e-11
UniRef50_A6SDI5 Cluster: Putative uncharacterized protein; n=2; ... 63 2e-09
UniRef50_P15112 Cluster: Elongation factor 2; n=2; Eukaryota|Rep... 62 4e-09
UniRef50_Q15029 Cluster: 116 kDa U5 small nuclear ribonucleoprot... 62 5e-09
UniRef50_Q9VAX8 Cluster: CG4849-PA; n=6; Eukaryota|Rep: CG4849-P... 61 9e-09
UniRef50_Q0CYA7 Cluster: Elongation factor 2; n=1; Aspergillus t... 61 1e-08
UniRef50_Q7PZ10 Cluster: ENSANGP00000017855; n=7; Eukaryota|Rep:... 60 2e-08
UniRef50_A7ATU9 Cluster: U5 small nuclear ribonuclear protein, p... 60 3e-08
UniRef50_UPI0000D62D3D Cluster: UPI0000D62D3D related cluster; n... 58 1e-07
UniRef50_Q8SQT7 Cluster: TRANSLATION ELONGATION FACTOR 2; n=3; M... 57 2e-07
UniRef50_Q23FM4 Cluster: Elongation factor G, domain IV family p... 54 1e-06
UniRef50_Q23U41 Cluster: Elongation factor G, domain IV family p... 48 9e-05
UniRef50_Q5CU80 Cluster: Snu114p GTpase, U5 snRNP-specific prote... 48 1e-04
UniRef50_Q8ZZC1 Cluster: Elongation factor 2; n=17; Thermoprotei... 47 2e-04
UniRef50_A6QTV7 Cluster: 116 kDa U5 small nuclear ribonucleoprot... 46 5e-04
UniRef50_A0RW30 Cluster: Translation elongation factor; n=4; Cre... 43 0.002
UniRef50_A3LU88 Cluster: ATP dependent RNA helicase and U5 mRNA ... 41 0.010
UniRef50_A5K760 Cluster: U5 small nuclear ribonuclear protein, p... 40 0.023
UniRef50_Q6CGB0 Cluster: Yarrowia lipolytica chromosome A of str... 38 0.12
UniRef50_UPI00004996CE Cluster: 116 kda u5 small nuclear ribonuc... 36 0.37
UniRef50_Q8TXJ4 Cluster: Elongation factor 2 (EF-2) [Contains: M... 36 0.49
UniRef50_UPI0000499A02 Cluster: metallo-beta-lactamase superfami... 33 2.6
UniRef50_A7S2I1 Cluster: Predicted protein; n=1; Nematostella ve... 33 3.5
UniRef50_A5DX67 Cluster: Putative uncharacterized protein; n=1; ... 32 4.6
UniRef50_Q385T9 Cluster: Putative uncharacterized protein; n=1; ... 32 6.0
UniRef50_A6QX07 Cluster: Predicted protein; n=1; Ajellomyces cap... 31 8.0
>UniRef50_Q99LT6 Cluster: Eef2 protein; n=26; Eukaryota|Rep: Eef2
protein - Mus musculus (Mouse)
Length = 287
Score = 131 bits (317), Expect = 5e-30
Identities = 57/87 (65%), Positives = 68/87 (78%)
Frame = +3
Query: 9 LCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKI 188
LCLSKS N HNRL+MKA+P PDGL EDID+G V+ R + K RARYL EK E+ V EARKI
Sbjct: 19 LCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKI 78
Query: 189 WCFGPEGTGPNXLVDCSKGVXYSMKLR 269
WCFGP+GTGPN L D +KGV Y +++
Sbjct: 79 WCFGPDGTGPNILTDITKGVQYLNEIK 105
Score = 42.3 bits (95), Expect = 0.004
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = +2
Query: 200 PRGYRPQXPGGLLQRSXXLNEIKDSVVAGFQWARXGXKXXAEENXXGGXFNXYDXXL 370
P G P + + LNEIKDSVVAGFQWA EEN G F+ +D L
Sbjct: 83 PDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATK-EGALCEENMRGVRFDVHDVTL 138
>UniRef50_P13639 Cluster: Elongation factor 2; n=491; Eukaryota|Rep:
Elongation factor 2 - Homo sapiens (Human)
Length = 858
Score = 131 bits (316), Expect = 7e-30
Identities = 57/87 (65%), Positives = 68/87 (78%)
Frame = +3
Query: 9 LCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKI 188
LCLSKS N HNRL+MKA+P PDGL EDID+G V+ R + K RARYL EK E+ V EARKI
Sbjct: 590 LCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKI 649
Query: 189 WCFGPEGTGPNXLVDCSKGVXYSMKLR 269
WCFGP+GTGPN L D +KGV Y +++
Sbjct: 650 WCFGPDGTGPNILTDITKGVQYLNEIK 676
Score = 42.3 bits (95), Expect = 0.004
Identities = 25/57 (43%), Positives = 29/57 (50%)
Frame = +2
Query: 200 PRGYRPQXPGGLLQRSXXLNEIKDSVVAGFQWARXGXKXXAEENXXGGXFNXYDXXL 370
P G P + + LNEIKDSVVAGFQWA EEN G F+ +D L
Sbjct: 654 PDGTGPNILTDITKGVQYLNEIKDSVVAGFQWATK-EGALCEENMRGVRFDVHDVTL 709
>UniRef50_A6RAK0 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 631
Score = 107 bits (256), Expect = 1e-22
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +3
Query: 15 LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
LSKS N HNRL+M AQP+ + + DI+ G++ PRDDFK RAR L ++ + VT+ARKIWC
Sbjct: 364 LSKSPNKHNRLYMTAQPLEEDVSRDIENGKIGPRDDFKARARILADEHGWDVTDARKIWC 423
Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLR 269
FGP+ TG N LVD +K V Y +++
Sbjct: 424 FGPDTTGANLLVDQTKAVQYLNEIK 448
Score = 36.3 bits (80), Expect = 0.28
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 254 LNEIKDSVVAGFQWA-RXGXKXXAEENXXGGXFNXYDXXL 370
LNEIKDSVV+GFQWA R G A+E FN D L
Sbjct: 444 LNEIKDSVVSGFQWATREG--PIADEPMRSVRFNILDVTL 481
>UniRef50_A6SB62 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 774
Score = 101 bits (243), Expect = 5e-21
Identities = 47/103 (45%), Positives = 67/103 (65%), Gaps = 5/103 (4%)
Frame = +3
Query: 15 LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
LSKS N HNRL+M A+P+ + + ++I+ G++ PRDDFK RAR L ++ + VT+ARKIWC
Sbjct: 507 LSKSPNKHNRLYMIAEPLDEEVSKEIEAGKIGPRDDFKARARILADEHGWDVTDARKIWC 566
Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLRTLL-----WLDFSGPAXE 308
FGP+ G N LVD +K V Y +++ + W GP E
Sbjct: 567 FGPDTNGANLLVDQTKAVQYLNEIKDSVVSGFQWASREGPIAE 609
>UniRef50_Q7R0C7 Cluster: GLP_608_18578_21274; n=2; Giardia
intestinalis|Rep: GLP_608_18578_21274 - Giardia lamblia
ATCC 50803
Length = 898
Score = 72.1 bits (169), Expect = 5e-12
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Frame = +3
Query: 6 QLCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARK 185
++ ++KS+N HNRL+ +A+P+ + + E I +G + D K RAR LT+K + EA++
Sbjct: 625 KVVMAKSANKHNRLYFEAEPISEEVIEAIKDGEITSEQDSKVRARILTDKYGWDSDEAKQ 684
Query: 186 IWCFGPEGTG----PNXLVDCSKGVXY 254
IW FGP G N +++ +KGV Y
Sbjct: 685 IWSFGPVGASSGHMTNLILEATKGVQY 711
>UniRef50_A0DDX4 Cluster: Chromosome undetermined scaffold_47, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_47,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 816
Score = 69.3 bits (162), Expect = 3e-11
Identities = 33/87 (37%), Positives = 54/87 (62%)
Frame = +3
Query: 9 LCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKI 188
+C++KS+N HNRL+ +A + + L I++G + ++ K RA L ++ + +EA KI
Sbjct: 550 VCMAKSANQHNRLYAQATSLNENLQIAIEKGFIT--NNSKGRANILAQEYNWNKSEALKI 607
Query: 189 WCFGPEGTGPNXLVDCSKGVXYSMKLR 269
W FGP+ TGPN L D + V Y ++R
Sbjct: 608 WTFGPDDTGPNILCDQTTAVQYINEIR 634
>UniRef50_A6SDI5 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 965
Score = 63.3 bits (147), Expect = 2e-09
Identities = 25/74 (33%), Positives = 43/74 (58%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
C +++ N N++ M A+P+ G+ EDI+ G+V+ + + +Y E + + +R IW
Sbjct: 662 CYAQTPNKKNKITMVAEPLDQGIAEDIESGKVSIKSPARVIGKYFEENYGWDLLASRSIW 721
Query: 192 CFGPEGTGPNXLVD 233
FGP+ GPN L D
Sbjct: 722 AFGPDDLGPNILQD 735
>UniRef50_P15112 Cluster: Elongation factor 2; n=2; Eukaryota|Rep:
Elongation factor 2 - Dictyostelium discoideum (Slime
mold)
Length = 830
Score = 62.5 bits (145), Expect = 4e-09
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 51 MKAQPMPDGLPEDIDEGR-VNPRDDFKTRARYLTEKXEYXVTEARKIWCFGPEGTGPNXL 227
+KA P+ L + I+ G ++ +DD K RA YL + E+ +A IW FGPEG G N L
Sbjct: 565 VKASPISMELQDLIEAGSDISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLL 624
Query: 228 VDCSKGVXYSMKLR 269
V+ +KGV Y +++
Sbjct: 625 VNVTKGVQYLNEIK 638
Score = 37.5 bits (83), Expect = 0.12
Identities = 20/39 (51%), Positives = 21/39 (53%)
Frame = +2
Query: 254 LNEIKDSVVAGFQWARXGXKXXAEENXXGGXFNXYDXXL 370
LNEIKDS V FQWA +EN G FN YD L
Sbjct: 634 LNEIKDSFVGAFQWATK-EGVVCDENMRGIRFNLYDVTL 671
>UniRef50_Q15029 Cluster: 116 kDa U5 small nuclear ribonucleoprotein
component; n=58; Eukaryota|Rep: 116 kDa U5 small nuclear
ribonucleoprotein component - Homo sapiens (Human)
Length = 972
Score = 62.1 bits (144), Expect = 5e-09
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
C +++ N N++ M A+P+ GL EDI+ V + K + K ++ + AR IW
Sbjct: 674 CFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDWDLLAARSIW 733
Query: 192 CFGPEGTGPNXLVD 233
FGP+ TGPN LVD
Sbjct: 734 AFGPDATGPNILVD 747
>UniRef50_Q9VAX8 Cluster: CG4849-PA; n=6; Eukaryota|Rep: CG4849-PA -
Drosophila melanogaster (Fruit fly)
Length = 975
Score = 61.3 bits (142), Expect = 9e-09
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
C +++ N N++ M ++P+ GL EDI+ G V + K + ++ + AR IW
Sbjct: 677 CFAETPNKKNKITMISEPLEKGLAEDIENGTVCINWNKKRIGEFFQVNYDWDLLAARSIW 736
Query: 192 CFGPEGTGPNXLVD 233
FGP+ TGPN LVD
Sbjct: 737 AFGPDSTGPNILVD 750
>UniRef50_Q0CYA7 Cluster: Elongation factor 2; n=1; Aspergillus
terreus NIH2624|Rep: Elongation factor 2 - Aspergillus
terreus (strain NIH 2624)
Length = 744
Score = 60.9 bits (141), Expect = 1e-08
Identities = 27/55 (49%), Positives = 38/55 (69%)
Frame = +3
Query: 15 LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEA 179
LSKS N HNRL++ AQP+ + + I+ G++ PRDDFK RAR L + + VT+A
Sbjct: 515 LSKSPNKHNRLYVTAQPLDEEVSLAIEAGKITPRDDFKARARLLADDYGWDVTDA 569
>UniRef50_Q7PZ10 Cluster: ENSANGP00000017855; n=7; Eukaryota|Rep:
ENSANGP00000017855 - Anopheles gambiae str. PEST
Length = 974
Score = 60.5 bits (140), Expect = 2e-08
Identities = 27/74 (36%), Positives = 42/74 (56%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
C +++ N N++ M A+P+ GL EDI+ V+ + K + ++ + AR IW
Sbjct: 676 CFAETPNKKNKITMIAEPLEKGLAEDIENETVSIGWNKKKLGEFFQVNYQWDLLAARSIW 735
Query: 192 CFGPEGTGPNXLVD 233
FGP+ TGPN LVD
Sbjct: 736 AFGPDSTGPNILVD 749
>UniRef50_A7ATU9 Cluster: U5 small nuclear ribonuclear protein,
putative; n=1; Babesia bovis|Rep: U5 small nuclear
ribonuclear protein, putative - Babesia bovis
Length = 999
Score = 59.7 bits (138), Expect = 3e-08
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
C +++ N NRL A+P+ G+ IDEG V+ D E + + A+ +W
Sbjct: 704 CYAETQNQKNRLCFIAEPLERGMASAIDEGIVSASMDPNELESTFMEVYNWDILAAKSVW 763
Query: 192 CFGPEGTGPNXLVD 233
CFGP+ +GPN L+D
Sbjct: 764 CFGPDNSGPNILLD 777
>UniRef50_UPI0000D62D3D Cluster: UPI0000D62D3D related cluster; n=1;
Mus musculus|Rep: UPI0000D62D3D UniRef100 entry - Mus
musculus
Length = 787
Score = 57.6 bits (133), Expect = 1e-07
Identities = 33/87 (37%), Positives = 46/87 (52%)
Frame = +3
Query: 9 LCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKI 188
L LSK N N ++MK P PDG +V+ + K RA Y TE + E+ KI
Sbjct: 539 LYLSKFPNKLNWMYMKVCPFPDG--------KVH-HQELKARACYFTEMYAWDAAESLKI 589
Query: 189 WCFGPEGTGPNXLVDCSKGVXYSMKLR 269
W F P+GT P+ L D +K V Y +++
Sbjct: 590 WSFRPDGTDPSFLTDINKSVQYLNEIK 616
Score = 38.3 bits (85), Expect = 0.070
Identities = 23/54 (42%), Positives = 27/54 (50%)
Frame = +2
Query: 200 PRGYRPQXPGGLLQRSXXLNEIKDSVVAGFQWARXGXKXXAEENXXGGXFNXYD 361
P G P + + LNEIKDSVVAGFQWA EEN F+ +D
Sbjct: 594 PDGTDPSFLTDINKSVQYLNEIKDSVVAGFQWATK-EGALCEENMHDVRFDVHD 646
>UniRef50_Q8SQT7 Cluster: TRANSLATION ELONGATION FACTOR 2; n=3;
Microsporidia|Rep: TRANSLATION ELONGATION FACTOR 2 -
Encephalitozoon cuniculi
Length = 850
Score = 56.8 bits (131), Expect = 2e-07
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +3
Query: 15 LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
++KS+N HNR++M +P+ + +++ + + D KT A EK + RKIWC
Sbjct: 587 MTKSANKHNRIYMTVEPLDQNIVDNLKDVK---SDQAKTMATNFREKLDIRDDWIRKIWC 643
Query: 195 FGPEGTGPNXLVDCSKGV 248
+ PE N LVD +KG+
Sbjct: 644 YAPEVNPLNLLVDGTKGI 661
>UniRef50_Q23FM4 Cluster: Elongation factor G, domain IV family
protein; n=5; Eukaryota|Rep: Elongation factor G, domain
IV family protein - Tetrahymena thermophila SB210
Length = 972
Score = 54.4 bits (125), Expect = 1e-06
Identities = 24/74 (32%), Positives = 42/74 (56%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
C + + N NRL M A + GL +DI++ ++ + +++ EK ++ + AR +W
Sbjct: 674 CYADTPNKKNRLTMLASQLDKGLAKDIEKEVISLDFEKPIVSKFFQEKYDWDILAARNVW 733
Query: 192 CFGPEGTGPNXLVD 233
FGPE +G N L+D
Sbjct: 734 SFGPEKSGANVLID 747
>UniRef50_Q23U41 Cluster: Elongation factor G, domain IV family
protein; n=6; Tetrahymena thermophila|Rep: Elongation
factor G, domain IV family protein - Tetrahymena
thermophila SB210
Length = 941
Score = 48.0 bits (109), Expect = 9e-05
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +3
Query: 6 QLCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRD-DFKTRARYLTEKXEYXVTEAR 182
Q+CL+K++N NRL+ +P+ + L I ++N ++ + + L + +A+
Sbjct: 672 QMCLAKTANKLNRLYGTCEPLDEELGSAIVSNKINIQEINSQETINSLVNDYSWEREDAK 731
Query: 183 KIWCFGP-EGTGPNXLVDCSKGV 248
+IWCFGP E N +V+ + G+
Sbjct: 732 RIWCFGPLEKESTNCIVNQTVGI 754
>UniRef50_Q5CU80 Cluster: Snu114p GTpase, U5 snRNP-specific protein,
116 kDa; n=2; Cryptosporidium|Rep: Snu114p GTpase, U5
snRNP-specific protein, 116 kDa - Cryptosporidium parvum
Iowa II
Length = 1035
Score = 47.6 bits (108), Expect = 1e-04
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = +3
Query: 12 CLSKSSNXHNRLFMKAQPMPDGLPEDIDEG----RVNPRDDFKTRARYLTEKXEYXVTEA 179
C S+N NRL++ ++P+ G+ ++++ G ++ D K L EK +
Sbjct: 740 CFGDSTNGLNRLYITSEPLDRGISDELENGIMKVSISDTKDPKYYGNLLAEKYGWDKLAV 799
Query: 180 RKIWCFGPE-GTGPNXLVDCSKGVXYSMKL 266
+ +W FGP+ G N L+D + + KL
Sbjct: 800 KSLWAFGPDPSIGSNVLLDDTSSITVDKKL 829
>UniRef50_Q8ZZC1 Cluster: Elongation factor 2; n=17;
Thermoprotei|Rep: Elongation factor 2 - Pyrobaculum
aerophilum
Length = 740
Score = 46.8 bits (106), Expect = 2e-04
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +3
Query: 6 QLCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARK 185
Q+ KS N HNRL+ +P+ + E I + + + RA+ L EK + EAR
Sbjct: 481 QVWEGKSPNKHNRLYFYVEPLDETTIELIASREITEDQEPRERAKILREKAGWDTDEARG 540
Query: 186 IWCFGPEGTGPNXLVDCSKGVXYSMKLR 269
IW + N +VD + G+ Y ++R
Sbjct: 541 IWAI--DDRYFNVIVDKTSGIQYLREIR 566
>UniRef50_A6QTV7 Cluster: 116 kDa U5 small nuclear ribonucleoprotein
component; n=2; Pezizomycotina|Rep: 116 kDa U5 small
nuclear ribonucleoprotein component - Ajellomyces
capsulatus NAm1
Length = 899
Score = 45.6 bits (103), Expect = 5e-04
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +3
Query: 9 LCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEAR 182
+C + + N N++ M A+P+ DG+ EDI+ GRV+ RD + A++ + ++ AR
Sbjct: 693 MCYAITPNKKNKITMIAEPLDDGIAEDIESGRVSIRDPIRKVAQFFEQNYDWDKLAAR 750
>UniRef50_A0RW30 Cluster: Translation elongation factor; n=4;
Crenarchaeota|Rep: Translation elongation factor -
Cenarchaeum symbiosum
Length = 730
Score = 43.2 bits (97), Expect = 0.002
Identities = 22/80 (27%), Positives = 43/80 (53%)
Frame = +3
Query: 15 LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
+SKS N HN++FM+ +P+ + + + GR++ D K A L E+ + +++
Sbjct: 476 MSKSPNRHNKIFMRVEPLEPTIGDMLRSGRISEMKDKKEMADLLKEQG-WDTDTVKRVMK 534
Query: 195 FGPEGTGPNXLVDCSKGVXY 254
P G N +++ +KGV +
Sbjct: 535 LDPRG---NVMINGTKGVQF 551
>UniRef50_A3LU88 Cluster: ATP dependent RNA helicase and U5 mRNA
splicing factor; n=4; Saccharomycetaceae|Rep: ATP
dependent RNA helicase and U5 mRNA splicing factor -
Pichia stipitis (Yeast)
Length = 978
Score = 41.1 bits (92), Expect = 0.010
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 18 SKSSNXHNRLFMKAQPMPDG-LPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
+ + + +N + + A+P+ D L I+ G ++ K ++ L + + AR +WC
Sbjct: 684 TSTPSGNNSISIIAEPLNDSKLSYAIESGSIDLSQPAKITSKILRKDFGWDALAARSVWC 743
Query: 195 FGPEG-TGPNXLVD 233
FGPEG P+ L+D
Sbjct: 744 FGPEGLQSPSLLLD 757
>UniRef50_A5K760 Cluster: U5 small nuclear ribonuclear protein,
putative; n=9; Eukaryota|Rep: U5 small nuclear
ribonuclear protein, putative - Plasmodium vivax
Length = 1251
Score = 39.9 bits (89), Expect = 0.023
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = +3
Query: 144 LTEKXEYXVTEARKIWCFGPEGTGPNXLVDCS------KGVXYSMK---LRTLLWLDFSG 296
LT+K + + R IW FGPE PN LVD S K YS+K ++ W G
Sbjct: 1000 LTDKHNWDLLSIRSIWAFGPESNSPNVLVDDSLYKETNKESLYSIKENIIQGFCWATKEG 1059
Query: 297 PAXE 308
P E
Sbjct: 1060 PLIE 1063
>UniRef50_Q6CGB0 Cluster: Yarrowia lipolytica chromosome A of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome A of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 950
Score = 37.5 bits (83), Expect = 0.12
Identities = 18/72 (25%), Positives = 37/72 (51%)
Frame = +3
Query: 18 SKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWCF 197
+++ N +++ + A+P+ + + + I G++ P D + K Y +R +W F
Sbjct: 664 AETPNKKSKITIIAEPLEEDVSKTISLGQITPTD------KQGFAKLGYDALASRNVWAF 717
Query: 198 GPEGTGPNXLVD 233
GP T PN L++
Sbjct: 718 GPTETSPNLLLN 729
>UniRef50_UPI00004996CE Cluster: 116 kda u5 small nuclear
ribonucleoprotein component; n=4; Entamoeba histolytica
HM-1:IMSS|Rep: 116 kda u5 small nuclear
ribonucleoprotein component - Entamoeba histolytica
HM-1:IMSS
Length = 941
Score = 35.9 bits (79), Expect = 0.37
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 24 SSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWCFGP 203
S+N NR+ + P+ + + I++G + K R L +K ++ + ++ + C GP
Sbjct: 658 STNHRNRIAVIIDPLDENTIKGIEKGELKEE---KGRDEILYKKYQWDILASKSLLCIGP 714
Query: 204 EGTGPNXLVD 233
E PN L++
Sbjct: 715 EEKIPNVLLN 724
>UniRef50_Q8TXJ4 Cluster: Elongation factor 2 (EF-2) [Contains: Mka
fusA intein]; n=192; Archaea|Rep: Elongation factor 2
(EF-2) [Contains: Mka fusA intein] - Methanopyrus
kandleri
Length = 1257
Score = 35.5 bits (78), Expect = 0.49
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +3
Query: 21 KSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWCFG 200
KS N HN+ ++ +P+ + + E I+EG+ NP + K + +A+ +
Sbjct: 1003 KSPNKHNKFYVTVEPVEEEIVEAIEEGKFNPEEMSKKELEETLMEYGMDRDDAKAV---- 1058
Query: 201 PEGTGPNXLVDCSKGVXYSMKLRTLL 278
G N +D + G+ Y ++ LL
Sbjct: 1059 ETVKGTNFFLDKTVGLQYLNEVMELL 1084
>UniRef50_UPI0000499A02 Cluster: metallo-beta-lactamase superfamily
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
metallo-beta-lactamase superfamily protein - Entamoeba
histolytica HM-1:IMSS
Length = 636
Score = 33.1 bits (72), Expect = 2.6
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = -1
Query: 293 TEIQPQQSP*FH*VXNSFGAIHQXVGAGTLGAKAPNLTG----FGNXVFXLFC*IPSASL 126
T I PQ P + + N F I G G + KA N++G F + C A
Sbjct: 341 TFIIPQNQPLYSPLGNKFQVILFGTG-GAVPGKARNVSGEIIRFNKTTIMIDCGECIAYQ 399
Query: 125 EVIAGIHATLINVLWQTIRHG 63
V +GIH IN+L+ T HG
Sbjct: 400 VVNSGIHPDDINILYVTHNHG 420
>UniRef50_A7S2I1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1144
Score = 32.7 bits (71), Expect = 3.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 150 EKXEYXVTEARKIWCFGPEGTGPNXLVD 233
E + A IW FGP GTGPN L++
Sbjct: 806 EAGKQWANAADHIWAFGPRGTGPNILLN 833
>UniRef50_A5DX67 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1026
Score = 32.3 bits (70), Expect = 4.6
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 18 SKSSNXHNRLFMKAQPMPD-GLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
+K+SN + + A+P+ D L I+ G ++ K A L + + AR +W
Sbjct: 731 AKTSNDSFSISIIAEPVNDPDLSNAIESGVLHANLSRKEMATILKTQFGWDALAARSVWV 790
Query: 195 FGPEG-TGPNXLVD 233
FGP+ P+ L+D
Sbjct: 791 FGPKDLIEPDILID 804
>UniRef50_Q385T9 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 164
Score = 31.9 bits (69), Expect = 6.0
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 215 AGTLGAKAPNLTGFGNXVFXLFC*IPSASLEVIAGIHATLI 93
AG + P+LT + VF FC IP++S+ +AG ++ +I
Sbjct: 84 AGCMRVSKPHLTRQQSYVFFPFCFIPTSSVPFVAGRYSAVI 124
>UniRef50_A6QX07 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 257
Score = 31.5 bits (68), Expect = 8.0
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +3
Query: 87 DIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWCFGP 203
D DEGR R D R YL + Y T AR FGP
Sbjct: 99 DRDEGRFEARSDQIQRTNYLAQLRRYQETLARSAPDFGP 137
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 376,793,605
Number of Sequences: 1657284
Number of extensions: 6407563
Number of successful extensions: 12670
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 12402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12662
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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