Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0778.Seq
         (434 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   1.7  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   1.7  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   5.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   5.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   5.1  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 234 CSKGVXYSMKLRTLLWLD 287
           CS G+ Y  + R  +W D
Sbjct: 124 CSPGLAYDREARVCMWAD 141


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 234 CSKGVXYSMKLRTLLWLD 287
           CS G+ Y  + R  +W D
Sbjct: 124 CSPGLAYDREARVCMWAD 141


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 163 TMLPKPVRFGALAPRVPAPT 222
           T  P+P +     PR P PT
Sbjct: 252 TPKPRPTKVSRRKPRPPRPT 271


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 248 NSFGAIHQXVGAGTLGAKAPNLTGFG 171
           N+    +Q  G   +G  AP+   FG
Sbjct: 331 NNMAGTYQMTGYSAMGMAAPHHQNFG 356


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 218  GAGTLGAKAPNLTGF 174
            G G+ G+K+P + GF
Sbjct: 1119 GPGSTGSKSPPVAGF 1133



 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 233 IHQXVGAGTLGAKAPN 186
           I Q VG GT+G+   N
Sbjct: 653 IRQCVGGGTIGSNQRN 668


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,005
Number of Sequences: 336
Number of extensions: 1464
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9670396
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)