Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0778.Seq
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...   105   3e-24
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...   105   3e-24
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    56   3e-09
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   2.2  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   3.8  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    25   3.8  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score =  105 bits (252), Expect = 3e-24
 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
 Frame = +3

Query: 15  LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
           LSKS N HNR+FM A+PM + L   I+ G VNPRDDFK RAR + ++  + VT+ARKIWC
Sbjct: 576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWC 635

Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLR-----TLLWLDFSGPAXEXSXXLKRIXVV 341
           FGP+ TG N +VD +K V Y  +++        W    GP  E +    R  ++
Sbjct: 636 FGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNIL 689


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score =  105 bits (252), Expect = 3e-24
 Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 5/114 (4%)
 Frame = +3

Query: 15  LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
           LSKS N HNR+FM A+PM + L   I+ G VNPRDDFK RAR + ++  + VT+ARKIWC
Sbjct: 576 LSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWC 635

Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLR-----TLLWLDFSGPAXEXSXXLKRIXVV 341
           FGP+ TG N +VD +K V Y  +++        W    GP  E +    R  ++
Sbjct: 636 FGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNIL 689


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 39/74 (52%)
 Frame = +3

Query: 12  CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
           C S + N  NR+ M  +P+  G+  DI+ G+VN     K  + +  +  ++ +  +R IW
Sbjct: 687 CFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIW 746

Query: 192 CFGPEGTGPNXLVD 233
            FGP+  G N L D
Sbjct: 747 AFGPDDRGTNILRD 760


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 78  LPEDIDEGRVNPRDDFKT 131
           LPE IDEG+++  DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 90  IDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWCFGPEGTGPNXL 227
           ++E +   R+  +    Y  +   + VT ++ +  FGP GTG   L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 206 LGAKAPNLTGFGNXVFXLFC*IPSAS 129
           +G   PNL   GN +F L   +PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,459,078
Number of Sequences: 5004
Number of extensions: 23186
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)