Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0778.Seq
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0662 + 30987187-30987277,30987825-30990214                      110   4e-25
04_01_0103 + 1082077-1082167,1083037-1085477                          105   2e-23
02_04_0017 + 18937774-18937864,18938505-18940945                      105   2e-23
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     83   1e-16
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    64   5e-11

>01_06_0662 + 30987187-30987277,30987825-30990214
          Length = 826

 Score =  110 bits (265), Expect = 4e-25
 Identities = 50/98 (51%), Positives = 68/98 (69%)
 Frame = +3

Query: 15  LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
           +SKS N HNRL+M+A+PM +GLPE IDEGR+ PRDD K R++ L+E+  +    A+KIWC
Sbjct: 573 MSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 632

Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLRTLLWLDFSGPAXE 308
           FGPE TGPN +VD  KGV Y  +++  +   F   + E
Sbjct: 633 FGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKE 670


>04_01_0103 + 1082077-1082167,1083037-1085477
          Length = 843

 Score =  105 bits (251), Expect = 2e-23
 Identities = 47/98 (47%), Positives = 67/98 (68%)
 Frame = +3

Query: 15  LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
           +SKS N HNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E+  +    A+KIWC
Sbjct: 577 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636

Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLRTLLWLDFSGPAXE 308
           FGPE TGPN +VD  KGV Y  +++  +   F   + E
Sbjct: 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674


>02_04_0017 + 18937774-18937864,18938505-18940945
          Length = 843

 Score =  105 bits (251), Expect = 2e-23
 Identities = 47/98 (47%), Positives = 67/98 (68%)
 Frame = +3

Query: 15  LSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWC 194
           +SKS N HNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E+  +    A+KIWC
Sbjct: 577 MSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWC 636

Query: 195 FGPEGTGPNXLVDCSKGVXYSMKLRTLLWLDFSGPAXE 308
           FGPE TGPN +VD  KGV Y  +++  +   F   + E
Sbjct: 637 FGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKE 674


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 8/106 (7%)
 Frame = +3

Query: 15  LSKSSNXHNRLFMKAQPMP-DGLPED-------IDEGRVNPRDDFKTRARYLTEKXEYXV 170
           +SKS N HNRL+M+A+P+  + L +D       ID+ R+ P+DD K R + L+E+  +  
Sbjct: 579 MSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKDDIKERGKILSEEFGWDK 638

Query: 171 TEARKIWCFGPEGTGPNXLVDCSKGVXYSMKLRTLLWLDFSGPAXE 308
             A+KIW FGPE  GPN LVD  KGV Y  +++  +   F   + E
Sbjct: 639 DLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKE 684


>06_03_0715 -
           23823427-23823525,23823616-23823822,23823907-23824017,
           23824124-23824322,23824410-23824495,23824940-23825098,
           23825204-23825302,23825385-23826578,23826666-23826734,
           23828042-23828812
          Length = 997

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 30/85 (35%), Positives = 46/85 (54%)
 Frame = +3

Query: 12  CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
           C +++ N  N++ M A+P+  GL EDI+ G V+     K    +  ++ ++ V  AR IW
Sbjct: 698 CFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIW 757

Query: 192 CFGPEGTGPNXLVDCSKGVXYSMKL 266
            FGPE  GPN L+D +  V     L
Sbjct: 758 AFGPEKQGPNILLDDTLSVEVDKNL 782



 Score = 29.9 bits (64), Expect = 0.94
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 254 LNEIKDSVVAGFQW-ARXG 307
           LN +KDS+V GFQW AR G
Sbjct: 783 LNAVKDSIVQGFQWGAREG 801


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,526,854
Number of Sequences: 37544
Number of extensions: 187051
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)