Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0778.Seq
         (434 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   124   2e-29
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   6e-11
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 33   0.13 
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    29   1.3  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   3.8  
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)                    27   5.0  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  124 bits (300), Expect = 2e-29
 Identities = 57/90 (63%), Positives = 68/90 (75%), Gaps = 1/90 (1%)
 Frame = +3

Query: 3   DQLCLSKSSNXHNRLFMKAQPMPDGLPEDIDEG-RVNPRDDFKTRARYLTEKXEYXVTEA 179
           +Q+CLSKS N HNRLFM A P+ + LPEDID+G  +NPR DFK RARYL +   + V EA
Sbjct: 562 NQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEA 621

Query: 180 RKIWCFGPEGTGPNXLVDCSKGVXYSMKLR 269
           RKIW FGPEGTGPN LVD SKGV Y  +++
Sbjct: 622 RKIWSFGPEGTGPNLLVDVSKGVQYLNEIK 651



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 25/57 (43%), Positives = 29/57 (50%)
 Frame = +2

Query: 200 PRGYRPQXPGGLLQRSXXLNEIKDSVVAGFQWARXGXKXXAEENXXGGXFNXYDXXL 370
           P G  P     + +    LNEIKDSVVAGFQWA        +EN  G  FN +D  L
Sbjct: 629 PEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATK-EGPLCDENVRGVRFNIHDVTL 684


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 29/74 (39%), Positives = 43/74 (58%)
 Frame = +3

Query: 12  CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
           C +++ N  N++ M A+P+  GL EDI+  +V    + K    +   K ++ +  AR IW
Sbjct: 542 CFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIW 601

Query: 192 CFGPEGTGPNXLVD 233
            FGPE TGPN LVD
Sbjct: 602 AFGPENTGPNILVD 615



 Score = 29.9 bits (64), Expect = 0.95
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 254 LNEIKDSVVAGFQWA 298
           LN +KDS++ GFQWA
Sbjct: 627 LNTVKDSIIQGFQWA 641


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 150 EKXEYXVTEARKIWCFGPEGTGPNXLVD 233
           E  +     A  IW FGP GTGPN L++
Sbjct: 170 EAGKQWANAADHIWAFGPRGTGPNILLN 197


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 9   LCLSKSSNXHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 119
           + L K  N H+   LF K + +P  L ED++EG V   D
Sbjct: 241 MLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +3

Query: 63  PMPDGLPEDIDEGR----VNPR 116
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
          Length = 232

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 45  LFMKAQPMPDGLPEDIDEGRVNPRD 119
           LF K + +P  L ED++EG V   D
Sbjct: 57  LFCKTKKLPVALSEDLEEGEVTEED 81


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 217  GPVPSGPKHQILRASVTXYS 158
            GPVPSG  H ILR  +  Y+
Sbjct: 1303 GPVPSGHVHGILRGYIVYYT 1322


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,497,698
Number of Sequences: 59808
Number of extensions: 189904
Number of successful extensions: 327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)