Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0778.Seq
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   132   8e-32
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   130   4e-31
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    55   2e-08
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        51   3e-07
AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical ...    28   2.5  
U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical
           protein F25H5.4 protein.
          Length = 852

 Score =  132 bits (320), Expect = 8e-32
 Identities = 58/89 (65%), Positives = 70/89 (78%)
 Frame = +3

Query: 3   DQLCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEAR 182
           +Q+CLSKS N HNRL   AQPMPDGL +DI+ G VN RD+FK RA+ L EK EY VTEAR
Sbjct: 582 NQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEAR 641

Query: 183 KIWCFGPEGTGPNXLVDCSKGVXYSMKLR 269
           KIWCFGP+GTGPN L+D +KGV Y  +++
Sbjct: 642 KIWCFGPDGTGPNLLMDVTKGVQYLNEIK 670



 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 200 PRGYRPQXPGGLLQRSXXLNEIKDSVVAGFQWA-RXGXKXXAEENXXGGXFNXYDXXL 370
           P G  P     + +    LNEIKDSVVAGFQWA R G    ++EN  G  FN +D  L
Sbjct: 648 PDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREG--VLSDENMRGVRFNVHDVTL 703


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
           protein.
          Length = 852

 Score =  130 bits (314), Expect = 4e-31
 Identities = 57/89 (64%), Positives = 70/89 (78%)
 Frame = +3

Query: 3   DQLCLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEAR 182
           +Q+CLSKS N HNRL   AQPMPDGL +DI+ G V+ RD+FK RA+Y  EK EY VTEAR
Sbjct: 582 NQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEAR 641

Query: 183 KIWCFGPEGTGPNXLVDCSKGVXYSMKLR 269
           KIWCFGP+GTGPN L+D +KGV Y  +++
Sbjct: 642 KIWCFGPDGTGPNLLMDVTKGVQYLNEIK 670



 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 200 PRGYRPQXPGGLLQRSXXLNEIKDSVVAGFQWA-RXGXKXXAEENXXGGXFNXYDXXL 370
           P G  P     + +    LNEIKDSVVAGFQWA R G    ++EN  G  FN +D  L
Sbjct: 648 PDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQWATREG--VLSDENMRGVRFNVHDVTL 703


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +3

Query: 12  CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
           C +++ N  N++ M A+P+   L EDI+   V    + +    +   K  + +  AR IW
Sbjct: 678 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 737

Query: 192 CFGPEGTGPNXLVD 233
            FGP+ TGPN L+D
Sbjct: 738 AFGPDTTGPNILLD 751


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 24/74 (32%), Positives = 39/74 (52%)
 Frame = +3

Query: 12  CLSKSSNXHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKXEYXVTEARKIW 191
           C +++ N  N++ M A+P+   L EDI+   V    + +    +   K  + +  AR IW
Sbjct: 553 CFAETPNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIW 612

Query: 192 CFGPEGTGPNXLVD 233
            FG + TGPN L+D
Sbjct: 613 AFGLDTTGPNILLD 626


>AL132865-7|CAB60598.1|  234|Caenorhabditis elegans Hypothetical
           protein Y62E10A.10 protein.
          Length = 234

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 93  DEGRVNPRDDFKTRARYLTEKXEYXVTEARKIWCFGPEGTGPNXLVDCSKGVXYSM 260
           + GR  P+  F  R +YL  +    +++A++    GP    P+ + +  KG   +M
Sbjct: 61  ENGRFLPKTSFNARRQYLCAEETGYLSKAQQRPAKGPNPMDPSQMTEMLKGNMMNM 116


>U70852-8|ABB51182.1|  868|Caenorhabditis elegans Hypothetical
           protein F45E4.7a protein.
          Length = 868

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +3

Query: 51  MKAQPMPDGLPEDIDEGRVNP---RDDFKTRARYLTEKXEYXVTEARKI 188
           ++  P P   PE     R NP   RDD +       ++ E+ VTE R I
Sbjct: 87  IQIHPAPIAGPESTSSFRTNPEENRDDEEDNVEETDQEIEFPVTEERSI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,323,207
Number of Sequences: 27780
Number of extensions: 140126
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)