Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0778.Seq
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.64 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.64 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   0.85 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   0.85 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 198 GPEGTGPNXLVDCSKGVXY 254
           GP   GP+ ++D + GV Y
Sbjct: 294 GPNSQGPSSVIDTNTGVDY 312


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 239 GAIHQXVGAGTLGAKAPNLTGFGNXV 162
           G  H  V AG +GA+ P+   +GN V
Sbjct: 897 GINHGPVTAGVIGARKPHYDIWGNTV 922


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 214 PVPSGPKHQILRASVTXYSXFSVRY 140
           P+P  P H +L A+V   S +  RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 214 PVPSGPKHQILRASVTXYSXFSVRY 140
           P+P  P H +L A+V   S +  RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 60  QPMPDGLPEDIDEGRVNPR 116
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 60  QPMPDGLPEDIDEGRVNPR 116
           +P+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 299 GPTEIQPQQSP 267
           G TEI PQ SP
Sbjct: 340 GDTEISPQTSP 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,510
Number of Sequences: 438
Number of extensions: 1848
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)