Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0776.Seq
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 52 4e-08
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 27 1.6
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 2.8
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 25 3.8
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 3.8
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 3.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 6.6
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 24 8.7
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 24 8.7
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 8.7
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 24 8.7
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 52.0 bits (119), Expect = 4e-08
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Frame = +1
Query: 73 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 249
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 250 DR 255
R
Sbjct: 61 PR 62
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 1.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 52 PNTTCSQCVRRQK 14
PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 137 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 27
FFT ++L + S I Y Y HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 70 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 249
T++ SL++ + + + K +IKKP S + + F N KK++ ++E+
Sbjct: 311 TLEKYKSLDFNMEKEGDVIQQLKSSIKKPLSGAEDEQKSRSMFSKNDEKLKKSLELMEDV 370
Query: 250 DRRD 261
+RD
Sbjct: 371 IKRD 374
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 236 SWRTLTEGIHSSVQESKGY 292
+W+ + IHSSVQE++G+
Sbjct: 6 AWQPQFDEIHSSVQEAEGF 24
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 3.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 85 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 192
S ++ + + NNN ++V + +I+ P+S + LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 233 PTAFL*IKPLYLKEWRLVTLFGSLLN 156
PT+F IKPL + +R+ L+ LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 293 GSLCFLVHYCESLLSGFSTTPTAF 222
G L F VH C+ L + S PTA+
Sbjct: 571 GVLQFTVHQCKELSNDPSKRPTAY 594
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 142 NIKKPFSKEPNNVTNLHSFRYNGLI 216
N+KK ++ N+T HS+ NG I
Sbjct: 323 NLKKQWASISPNITYKHSYNPNGTI 347
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 8.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 40 CSQCVRRQKGCER 2
CS+C + +KGC+R
Sbjct: 342 CSRCKKSKKGCDR 354
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 112 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRR 258
NN ++L+KK+ K P+ V + NG+ K A V P R+
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRK 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,739,021
Number of Sequences: 5004
Number of extensions: 32645
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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