Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0776.Seq
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 58 2e-09
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 56 1e-08
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 56 1e-08
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990... 31 0.53
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 30 0.70
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 1.6
09_02_0336 - 7397745-7398308,7398813-7400723 29 2.1
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.1
08_02_1497 - 27548328-27548534,27548876-27548978,27549074-275491... 28 2.8
08_01_0133 + 1062365-1063057,1063210-1063318,1063914-1064005,106... 27 4.9
12_02_0105 + 13647356-13648534 27 8.6
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485... 27 8.6
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 27 8.6
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 27 8.6
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 27 8.6
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/53 (50%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Frame = +1
Query: 88 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTV 59
Score = 29.9 bits (64), Expect = 0.92
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 279 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 431
K + KPA + + R+ VK + N+YR DL K L R SA
Sbjct: 75 KTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSA 125
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 56.0 bits (129), Expect = 1e-08
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = +1
Query: 91 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59
Score = 29.9 bits (64), Expect = 0.92
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 279 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 431
K K PAK + + R+ VK + N+YR DL K L R S+
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSS 125
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 56.0 bits (129), Expect = 1e-08
Identities = 25/52 (48%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Frame = +1
Query: 91 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTI 59
Score = 29.9 bits (64), Expect = 0.92
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 279 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 431
K K PAK + + R+ VK + N+YR DL K L R S+
Sbjct: 75 KTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSS 125
>09_06_0106 -
20898480-20898680,20898762-20898864,20898953-20899047,
20899113-20899135,20899725-20899799,20900219-20900267,
20900349-20900414,20901257-20901306,20901688-20901812,
20903488-20903600
Length = 299
Score = 30.7 bits (66), Expect = 0.53
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 115 NNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVG---VVENPDRRDSQ*CTRKQ 285
+NA L ++ +P ++ N+T ++ G++ + G V P RRDS C R+
Sbjct: 68 SNAGLKIAIDLLEPIKRKHPNITYADLYQLAGVVAVEVTGGPTVDFVPGRRDSSVCPREG 127
Query: 286 RLPES 300
RLP++
Sbjct: 128 RLPDA 132
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 30.3 bits (65), Expect = 0.70
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +3
Query: 18 CLRTHCEHVVFGVEIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLL 197
CL + + L+ +N++++ H + Q I CE++ + G L
Sbjct: 675 CLEAISDGISTETRTSLDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYL 733
Query: 198 QVQRLDSQESCWCRGEP 248
Q L+ + SC GEP
Sbjct: 734 QDSLLNEKHSCLSCGEP 750
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 70 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 201
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 75 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 176
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 189 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 79
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>08_02_1497 -
27548328-27548534,27548876-27548978,27549074-27549153,
27549245-27549327,27549899-27549947,27550028-27550093,
27550254-27550303,27550762-27550886,27551842-27551954
Length = 291
Score = 28.3 bits (60), Expect = 2.8
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 115 NNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVG--VVEN-PDRRDSQ*CTRKQ 285
+NA L ++ +P + +T ++ G++ + G VE P RRDS C R+
Sbjct: 68 SNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREG 127
Query: 286 RLPES 300
RLP++
Sbjct: 128 RLPDA 132
>08_01_0133 +
1062365-1063057,1063210-1063318,1063914-1064005,
1064399-1064560,1064718-1064834,1065029-1065127
Length = 423
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 78 FYGLNLFLHQTQRAHNVCVDKKDAN 4
F +NLF+H+TQ + V VD KD++
Sbjct: 281 FAEINLFVHRTQFSIKVMVDIKDSD 305
>12_02_0105 + 13647356-13648534
Length = 392
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 191 WRLVTLFGSLLNGFLILRFFTRNALLLRMIIQFSDDDI 78
W L + LL G L+ R + +L+R+I DDI
Sbjct: 250 WALGCIMAQLLGGQLLFRGMSHEDMLIRIIQVLGVDDI 287
>05_03_0249 -
10946993-10947073,10947307-10947432,10948497-10948552,
10949066-10949338,10951434-10951716
Length = 272
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 242 RTLTEGIHSSVQESKGYQKAR*KLN 316
RTL E H SV+E + YQK +LN
Sbjct: 129 RTLEEAKHGSVEEIQQYQKEISRLN 153
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 257 GIHSSVQESKGYQKAR*KLNPXSIQGWCQEVTVQSEEVVKG 379
G++ E + ++K NP ++ W ++ +S+EV+KG
Sbjct: 703 GVNPLKVEIRLFEKLFLSENPVELEDWLGDLNPRSKEVIKG 743
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 312 LIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 422
L+ R + G LYK L A+++ T CKA L +
Sbjct: 51 LLGRQSQVGCLDELYKSVEDLSADYFHTKACKAMLMK 87
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 57 EIGLNRKNVVVTELDDHPQQQCIPCEEAQYQKAV 158
E+ +KN+ VT+ + ++C PC + KA+
Sbjct: 131 ELNGEKKNMAVTQFEPADARRCFPCWDEPSFKAI 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,243,331
Number of Sequences: 37544
Number of extensions: 209183
Number of successful extensions: 514
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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