Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0776.Seq
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            59   1e-09
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    52   1e-07
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    29   1.0  
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   1.8  
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    26   9.6  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
 Frame = +1

Query: 91  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTI 59



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 279 KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 431
           K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SA
Sbjct: 74  KTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSA 124


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
 Frame = +1

Query: 91  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 237
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTI 59



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 255 KGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 431
           +G  +   K K   KP  ++ +   K    R    V   +  N+YR DL KA L R SA
Sbjct: 66  QGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSA 124


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 133 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRRDSQ*CTRKQRLPESP 303
           K+ + ++   KEP+  T     R N    KKA  V E   R++S   T+K+R  + P
Sbjct: 770 KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKP 826


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 138 AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 242
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 QQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCR 239
           +QC  C E +++   + G  +C     +  +R D+ + C C+
Sbjct: 394 KQCRECREQRHKTLAEPGDWECPSCDFVNFRRNDACKKCECK 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,090,970
Number of Sequences: 28952
Number of extensions: 172623
Number of successful extensions: 425
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)