Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0774.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   104   1e-23
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   103   2e-23
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.7  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.6  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   4.8  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    25   6.3  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  104 bits (249), Expect = 1e-23
 Identities = 60/168 (35%), Positives = 77/168 (45%)
 Frame = +3

Query: 84  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKRLV 263
           ++ ARP VS+YS K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++  
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 264 TKPVPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXDRMFAPTKPWRRWHXXXXXXX 443
            +           L                          RMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 444 XXXXXXXXXXXTGVPXLVQARGTLLKRFPSFPWL*PTKVQEINKTKQA 587
                      +GVP L+ ARG  ++  P  P +    VQ   KTK+A
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEA 167



 Score = 95.5 bits (227), Expect = 5e-21
 Identities = 50/98 (51%), Positives = 56/98 (57%)
 Frame = +2

Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPHEALAALAPSRQPX 439
           GHQTSAESWGTGRA+ARIP V GGGTHRSGQ AFGNMCR G    P +            
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 440 TAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVAD 553
                + S+      P       H IE+IPE+PLVV D
Sbjct: 119 EKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDD 156


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  103 bits (247), Expect = 2e-23
 Identities = 59/168 (35%), Positives = 77/168 (45%)
 Frame = +3

Query: 84  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKRLV 263
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN RQPY VS++  
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59

Query: 264 TKPVPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXDRMFAPTKPWRRWHXXXXXXX 443
            +           L                          RMFAPTK WR+WH       
Sbjct: 60  HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119

Query: 444 XXXXXXXXXXXTGVPXLVQARGTLLKRFPSFPWL*PTKVQEINKTKQA 587
                      +GVP L+ ARG  ++  P  P +    VQ   KTK+A
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEA 167



 Score = 95.5 bits (227), Expect = 5e-21
 Identities = 50/98 (51%), Positives = 56/98 (57%)
 Frame = +2

Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPHEALAALAPSRQPX 439
           GHQTSAESWGTGRA+ARIP V GGGTHRSGQ AFGNMCR G    P +            
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 440 TAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVAD 553
                + S+      P       H IE+IPE+PLVV D
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDD 156


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 287  GTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPY 388
            G+  A A  P V+GG   R G G +G +    PY
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPY 1531


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 145 APCTVSLFSEYTDTKGRATDRLISLL 68
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 83  SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 193
           SI SP+ SVG   +  D +  S + P+ I G  +  P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 410 PGLRGGEHTVHHDTCYRRHPD 348
           PG    +HTVH  T Y++ PD
Sbjct: 13  PGKNCRKHTVHRVTQYKKGPD 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,659
Number of Sequences: 5004
Number of extensions: 40655
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)