Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0774.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 99 3e-21
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 96 2e-20
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.13
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.17
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.30
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 1.6
10_02_0199 + 6668902-6669293,6669825-6669882 29 2.1
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 2.1
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 29 3.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.7
07_01_0380 - 2834080-2834451,2835945-2836130 28 4.9
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 28 6.5
03_01_0147 - 1170481-1171260,1171332-1171511 28 6.5
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 8.6
04_04_0463 - 25397837-25399693,25402136-25402405 27 8.6
03_04_0025 - 16557328-16557851,16558000-16558123,16558518-165586... 27 8.6
02_05_0073 - 25602268-25603182,25603273-25604190 27 8.6
01_05_0109 + 18201344-18202811,18203234-18203883 27 8.6
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 98.7 bits (235), Expect = 3e-21
Identities = 50/100 (50%), Positives = 59/100 (59%)
Frame = +2
Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPHEALAALAPSRQPX 439
GHQTSAESWGTGRAV+RIP V GGGTHR+GQGAFGNMCRGG P +
Sbjct: 63 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVH 122
Query: 440 TAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVADKS 559
+ S+ P H IE +PELPLV++D +
Sbjct: 123 LRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSA 162
Score = 81.0 bits (191), Expect = 7e-16
Identities = 53/166 (31%), Positives = 70/166 (42%), Gaps = 2/166 (1%)
Frame = +3
Query: 96 RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKRLVTK 269
RPLVSV + + + T ++ L VF+AP+RPD+V VH +S N RQPY VS+R +
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQ 65
Query: 270 PVPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXDRMFAPTKPWRRWHXXXXXXXXX 449
+ RMFAPTK WR+WH
Sbjct: 66 TSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRR 125
Query: 450 XXXXXXXXXTGVPXLVQARGTLLKRFPSFPWL*PTKVQEINKTKQA 587
T VP LV ARG ++ P P + + I KT QA
Sbjct: 126 VAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEKTSQA 171
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 95.9 bits (228), Expect = 2e-20
Identities = 50/98 (51%), Positives = 57/98 (58%)
Frame = +2
Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPHEALAALAPSRQPX 439
GHQTSAESWGTGRAV+RIP V GGGTHR+GQGAFGNMCRGG P +
Sbjct: 62 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIR 121
Query: 440 TAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVAD 553
+ S+ P H IE +PE PLVV+D
Sbjct: 122 LRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSD 159
Score = 85.0 bits (201), Expect = 4e-17
Identities = 55/168 (32%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Frame = +3
Query: 87 SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKRLV 263
+ ARPLVSV + E A +P V +APIRPD+V H +S N RQPY VS+R
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62
Query: 264 TKPVPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXDRMFAPTKPWRRWHXXXXXXX 443
+ + RMFAPTK WRRWH
Sbjct: 63 HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRL 122
Query: 444 XXXXXXXXXXXTGVPXLVQARGTLLKRFPSFPWL*PTKVQEINKTKQA 587
T VP LV ARG ++ P FP + ++ I KT Q+
Sbjct: 123 RRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQS 170
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 381 PPRHMLPKAP*PDLWVPPP 325
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +2
Query: 59 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 214
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 59 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 214
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 59 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 214
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 275 AESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRG 379
A+SW TGRA A + R GG R A N G
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEG 70
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 59 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 214
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 201 DVHVSMSKNSRQPYCVSKRLVTKPVPNHGV 290
DVH+ +++NSR Y ++K+LV HGV
Sbjct: 798 DVHIVLTENSRDRY-INKKLVAVGRDKHGV 826
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFG 364
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>07_01_0380 - 2834080-2834451,2835945-2836130
Length = 185
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Frame = +2
Query: 263 HQ-TSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPH---EALAALAPSR 430
HQ S+ G A AR V G + SG G+ V P +A AA AP+
Sbjct: 92 HQGESSSGGGVSTAAARHCDVAGSSSSHSGSGSGSATPPRPALVSPRAGLQAAAAAAPTM 151
Query: 431 QPXTAESGLGSSR 469
A SGL R
Sbjct: 152 NQPPAASGLSMKR 164
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 548 LQPREARESFQ*CASSLNERWDASSSNGCCQGRS 447
++PRE ++ Q S+ NE WD + ++G G +
Sbjct: 673 VEPRERGDNEQRVVSAYNEAWDVAGADGRAGGEA 706
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 53 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 214
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 168 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 76
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>04_04_0463 - 25397837-25399693,25402136-25402405
Length = 708
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -3
Query: 563 LDFCRLQPREARESFQ*CASSLNERWDASSSNGCCQGRSPLSXVDATVPAP 411
L C P + C+S R A++S C+G + ++ +VPAP
Sbjct: 14 LGLCVHVPEAEEGEREDCSSERRRRLPAAASGARCRGEAAVTVGPESVPAP 64
>03_04_0025 -
16557328-16557851,16558000-16558123,16558518-16558654,
16561050-16561185,16561296-16561721
Length = 448
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 401 EALAALAPSRQPXTAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVADKSPGDQQDQ 580
E++A +AP R+ ++ + R RP R G + K+ P V + PG ++
Sbjct: 383 ESVAPIAPVRE----DNAVRKERTARRRPGERDGGKLRQSKMRS-PQKVVRRRPGQSEEF 437
Query: 581 TGWHLP 598
WH+P
Sbjct: 438 WVWHMP 443
>02_05_0073 - 25602268-25603182,25603273-25604190
Length = 610
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 323 RGGGTHRSGQGAFGNMCRGGPYVRPHEALA 412
RG G HRSG G G++ G VR A++
Sbjct: 581 RGRGAHRSGGGGGGSVASGRSGVRAVSAMS 610
>01_05_0109 + 18201344-18202811,18203234-18203883
Length = 705
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 347 GQGAFGNMCRGGPYVRPHEALAALAPSRQPXTAESGLGSSRCCYWRPXA 493
G G N+ G P+ + A A S+Q + S L CY P A
Sbjct: 551 GLGRLANIAGGSPFTQSDHAGIEKAQSQQSDASVSPLVGKGSCYQAPEA 599
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,888,975
Number of Sequences: 37544
Number of extensions: 363460
Number of successful extensions: 1307
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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