Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0774.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               102   3e-22
SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)                28   5.0  
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  102 bits (244), Expect = 3e-22
 Identities = 53/98 (54%), Positives = 59/98 (60%)
 Frame = +2

Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPHEALAALAPSRQPX 439
           GHQTSAESWGTGRAVARIP VRGGGTHRSGQGAFGNMCRGG    P +            
Sbjct: 56  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQ 115

Query: 440 TAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVAD 553
                + S+      P       H IEKI E+PLV++D
Sbjct: 116 QRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISD 153



 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 50/165 (30%), Positives = 73/165 (44%)
 Frame = +3

Query: 93  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKRLVTKP 272
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K    + 
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59

Query: 273 VPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXDRMFAPTKPWRRWHXXXXXXXXXX 452
                     +                          RMFAPTK WR+WH          
Sbjct: 60  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119

Query: 453 XXXXXXXXTGVPXLVQARGTLLKRFPSFPWL*PTKVQEINKTKQA 587
                   + +P L+ ARG  +++    P +    ++ + KT  A
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAA 164


>SB_42286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1820

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 461 CQGRSPLSXVDATVPAPPGLRGGE 390
           C GR+P++  + TV  P GL+ GE
Sbjct: 832 CTGRNPINVSEKTVTLPFGLKAGE 855


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 160  GRGLAAPCTVSLFSEYTDTKGRATDRLI 77
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_35560| Best HMM Match : zf-B_box (HMM E-Value=1e-20)
          Length = 470

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 569 DLLDFCRLQPREARESFQ*CASSLNERWDASSSNGCCQGRSP 444
           DLL F     R A   ++ C S+  + W++ + +  C G++P
Sbjct: 378 DLLVFLSPVQRSANSQWELCYSAKRDGWNSKTFHEKCDGKAP 419


>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 382 TVCSPPRSPGGAGTVASTXDSGERPWQQPXXXXXXXXXXXXEAH 513
           T  +P  +PGGA + AS   +G  P   P            +AH
Sbjct: 121 TTAAPQTTPGGATSAASATPNGNAPTASPTIPKSGADEEALKAH 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,064
Number of Sequences: 59808
Number of extensions: 361853
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)