Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0774.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    99   2e-21
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    28   4.4  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 50/99 (50%), Positives = 60/99 (60%)
 Frame = +2

Query: 260 GHQTSAESWGTGRAVARIPXVRGGGTHRSGQGAFGNMCRGGPYVRPHEALAALAPSRQPX 439
           G Q SAESWGTGRAVARIP VRGGGTHRSGQGAFGNMCRGG    P +       +    
Sbjct: 58  GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIA 117

Query: 440 TAESGLGSSRCCYWRPXARSG*RHIIEKIPELPLVVADK 556
                + S+      P       H+I+++ E+PLVV+DK
Sbjct: 118 QKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDK 156



 Score = 80.6 bits (190), Expect = 8e-16
 Identities = 50/168 (29%), Positives = 73/168 (43%)
 Frame = +3

Query: 93  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKRLVTKP 272
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+ +   + 
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61

Query: 273 VPNHGVPDVLLPEFXXXXXXXXXXXXXXXXXXXXXXDRMFAPTKPWRRWHXXXXXXXXXX 452
                     +                           MFAP K +RRWH          
Sbjct: 62  SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRY 121

Query: 453 XXXXXXXXTGVPXLVQARGTLLKRFPSFPWL*PTKVQEINKTKQAGIF 596
                   +G+P L+QARG ++ +    P +   KV+   KTK+A +F
Sbjct: 122 AVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVF 169


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 311 IPXVRGGGTHRSGQGAFGNMCRGGPYV-RPHEALAALAPS 427
           +P   GGG   S Q A GN C GG     P  A A LAP+
Sbjct: 26  LPGAGGGGCCSSAQPACGNPCGGGGAAPAPVYAAAPLAPA 65


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 387 YGPPRHMLPKAP*PDLWVPPPRTXGIRATAR-PVPH 283
           Y PPR   P AP P +++PPP   G     R P+ H
Sbjct: 159 YPPPRGY-PPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 387 YGPPRHMLPKAP*PDLWVPPPRTXGIRATAR-PVPH 283
           Y PPR   P AP P +++PPP   G     R P+ H
Sbjct: 159 YPPPRGY-PPAPAPGVYMPPPGMPGAYPPPRMPIGH 193


>U88167-5|AAB42227.1|  107|Caenorhabditis elegans Hypothetical
           protein D2092.8 protein.
          Length = 107

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 380 GPYVRPHEALAALAPSRQPXTAESGLGSSRCCYWRP 487
           GP   P+ A AA+AP   P  A  G+G+    Y  P
Sbjct: 60  GPMAAPYFAPAAIAPPPPPQGAVIGVGAQPAVYSAP 95


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 461 CQGRSPLSXVDATVPAPPGLRGGEHTVHHDTCYRRHPDR 345
           C   S LS  D+ VPAP G + G  +  HD  Y  +  R
Sbjct: 37  CSSSSSLSN-DSFVPAPQGPQNGHTSSSHDNDYSEYRPR 74


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 141 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 40
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,889,011
Number of Sequences: 27780
Number of extensions: 256720
Number of successful extensions: 738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)