Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0773.Seq
(432 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.25
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 28 3.1
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 3.1
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 3.1
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 4.1
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 4.1
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 27 4.1
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 4.1
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 5.5
At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA... 27 7.2
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA... 27 7.2
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA... 27 7.2
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 7.2
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 7.2
At3g62370.1 68416.m07006 expressed protein 27 7.2
At5g65170.1 68418.m08197 VQ motif-containing protein contains PF... 26 9.6
At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger) fa... 26 9.6
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 26 9.6
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.5 bits (68), Expect = 0.25
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -3
Query: 280 QSNSPPGSVSNRITREF*TATS-VSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMK 104
Q + P V ++ F T V S LG +H PA +I+R P PP +S ++
Sbjct: 199 QPTADPERVKAQLKSMFDLDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLR 256
Query: 103 VVVFQRRSRETISHLCYTSHV 41
+++F E +CY S V
Sbjct: 257 MLLFDSFFNEYKGVICYVSVV 277
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 301 SLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 122
S T PP S +PPG + + +A S ATSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSS---SAVS-PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 121 S 119
S
Sbjct: 225 S 225
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 151 DRAPLPPNRVSNETMKVVVFQRRSRET 71
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 202 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 65
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 142 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 32
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 142 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 32
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 282 PSQTPRLAVSRTGSRGSFKRRRAFPPRHHSARLERNTVR 166
P ++PR +VSR+ R S K P R R+ R+ VR
Sbjct: 563 PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVR 601
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 190 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 95
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 226 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 101
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 328 ELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
++ GH +TD PP SNS NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 384
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 328 ELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
++ GH +TD PP SNS NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
identical to trehalose-6-phosphate phosphatase (AtTPPA)
[Arabidopsis thaliana] GI:2944178
Length = 385
Score = 26.6 bits (56), Expect = 7.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -3
Query: 328 ELALGHLRYSLTDVPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIID 149
++ GH +TD PP SNS NR+ AT++S + L L T R I+D
Sbjct: 2 DMKSGHSSPVMTDSPPISNSRLTIRQNRLPYSSAAATAISQNNNL--LLTVPRKKTGILD 59
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 379 DQASFCPFAPRXVSVLAELALGHLRYSLTDVPPQSNSP 266
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 394 VLEHLDQASFCPFAPRXVSVLAELALGHLRYSLTDVP 284
+L H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 8 MLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 248 PDHAGVLNGDERFRHVTTLHAWN 180
P G NG +RF H+ ++AWN
Sbjct: 171 PIDNGEGNGGDRFGHLVDIYAWN 193
>At5g65170.1 68418.m08197 VQ motif-containing protein contains
PF05678: VQ motif
Length = 362
Score = 26.2 bits (55), Expect = 9.6
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 289 VPPQSNSPPGSVSNRITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 110
VPP +S +N + + T + + TSP+C++ T + R P +RVS
Sbjct: 91 VPPPISSEQVFFTNPLQQNLRTVPNTNTTSPICSVPTDKKNGL-ATTRNPKKRSRVSRRA 149
Query: 109 MKVVV 95
V+
Sbjct: 150 PTTVL 154
>At5g03450.1 68418.m00300 zinc finger (C3HC4-type RING finger)
family protein
Length = 630
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 349 VEQKGKSWLDPDVQVRIGTAKARLSI 426
+EQK SW + +VQ +I A+ RL +
Sbjct: 203 IEQKTASWSNKEVQWKITEAELRLEV 228
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 76 RAIVAEKPLLS-LFHYLLGWAEAVRG 150
+++ AE P+ + LF Y GWA+ + G
Sbjct: 153 QSLTAEIPMFARLFRYYAGWADKIHG 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,109
Number of Sequences: 28952
Number of extensions: 204446
Number of successful extensions: 553
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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