Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0772.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.36 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   1.9  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         20   7.8  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +2

Query: 11  WINEIPTVPI 40
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 181 SSLKNHYFHCFITYSVGRK 237
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 149 PLMSPYNARLESSSTGSS--FPADSPKPVPLAVVSL 48
           PL+ P   R  S+++ +S   P+ SP+P  +  +SL
Sbjct: 197 PLLVPIPQRTASTASSASNYSPSQSPEPESVRPLSL 232


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 280 ERXTVXPPIYRPRXASAQPSK 218
           E  T   P YRPR +  +P +
Sbjct: 224 EDQTRRNPYYRPRTSRTEPPR 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,504
Number of Sequences: 336
Number of extensions: 1562
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)