Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0772.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.5  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   5.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   5.7  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   5.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   7.6  

>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 304 PGHRSARLERXTVXPPIYRPRXASAQPSK**NNESSGFSAT 182
           PG R + L +  V PP  RP   S  P     + S  +S T
Sbjct: 126 PGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGSYSQT 166


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 158 YATPLMSPYNARLESSSTGSSFPADSP 78
           Y  P+ SPY++    SST SSF   SP
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP 157


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 17  NEIPTVPIYYLAKPQP 64
           NE+PTVPI Y  KP P
Sbjct: 274 NEVPTVPIRY--KPPP 287


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 155 ATPLMSPYNARLESSSTGSSFPADSPK 75
           +T    PY A  + ++TGSSF AD  K
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK 277


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 167 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 66
           SPT      + +N  L  +S   S  ADSP  +P
Sbjct: 171 SPTSVERRFTEWNVPLRETSPSPSETADSPNKLP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,901
Number of Sequences: 5004
Number of extensions: 26480
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)