Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0772.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0828 + 25137782-25138312,25141349-25141588                       29   1.4  
03_04_0006 + 16257288-16259522                                         29   1.8  
12_02_0077 - 13288916-13289659,13289689-13289691                       28   3.1  
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550...    28   3.1  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    27   5.5  
02_05_0726 - 31252210-31253166,31253667-31253840,31254320-312543...    27   5.5  
01_01_1195 - 9567023-9567789,9567871-9568120                           27   5.5  
07_03_1151 + 24385272-24386543                                         27   7.2  
06_03_1023 - 26952195-26952635,26952723-26952934,26953038-269537...    27   7.2  

>06_03_0828 + 25137782-25138312,25141349-25141588
          Length = 256

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 224 RLGGSGARSINRRXHGVSFQACRAVTWRKRSXXYKTSAGXXWRTLPGGEFDWGGASAK 397
           R GG+ +R I  R  GV+ ++  +      S  ++ + G  W    GG  + GG +A+
Sbjct: 100 RRGGAASREIAMRRSGVAARSAAST----HSTPWRRTTGGRWARGGGGRLEAGGGAAE 153


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -2

Query: 176 AXRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 24
           A RSP    Y T L +   ARL    T    PA SP    +AV S   + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215


>12_02_0077 - 13288916-13289659,13289689-13289691
          Length = 248

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 119 ESSSTGSSFPADSPKPVPLAVVSLDSR 39
           ++ S G S P DS + VP+ VV+L  R
Sbjct: 3   DNQSLGKSLPKDSRRHVPVGVVALKKR 29


>04_01_0416 -
           5504415-5504590,5509032-5509116,5509190-5509322,
           5509426-5510312
          Length = 426

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -2

Query: 149 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 42
           PL+ P  AR   SSTGSSFP  S  P    ++ L S
Sbjct: 47  PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81


>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 224 RLGGSGARSINRRXHGVSFQAC 289
           RLGG+     NR+ HGV+  AC
Sbjct: 437 RLGGTNLADQNRQKHGVAVLAC 458


>02_05_0726 -
           31252210-31253166,31253667-31253840,31254320-31254364,
           31254463-31254573,31254669-31254746,31255170-31255234,
           31255358-31255733,31256891-31257035,31257308-31257462,
           31259036-31259182
          Length = 750

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 167 SPTYATPLMSPYNARLESSSTGSSFPADSPKPVP 66
           SP Y  P ++  N  + S +T S  P   PK  P
Sbjct: 159 SPKYVKPAVAKQNGEVVSRATKSDAPVSKPKVDP 192


>01_01_1195 - 9567023-9567789,9567871-9568120
          Length = 338

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 134 YNARLESSSTGSSFPADSPKPVPLAVVSL 48
           +  R  SSS+ S  PA +P P P  VV+L
Sbjct: 157 FRRRKPSSSSASPAPAPAPPPPPQPVVAL 185


>07_03_1151 + 24385272-24386543
          Length = 423

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 391 RCAAPVKLAAWQCPPXGSRRSFIRXRAFPPGHRSA--RLERXTVXPPIYRPRXASAQPSK 218
           R AAP K   ++CP  G  + F   +A   GHR++  R+      P +     A+A P+ 
Sbjct: 284 RAAAPAKRTRYECP--GCGKVFASYQAL-GGHRASHKRINTSCSAPKVSPATAAAAAPAP 340

Query: 217 **NNESSGFSATIA 176
             ++E+    +T++
Sbjct: 341 EPSSETYASLSTLS 354


>06_03_1023 -
           26952195-26952635,26952723-26952934,26953038-26953757,
           26955042-26955735
          Length = 688

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 26  PTVPIYYLAKPQPRERAWENQRGKKTLLSLTLV 124
           P VPI     P P   +W + R  K L+ + LV
Sbjct: 246 PEVPILASPSPSPLSSSWWSPRSLKILMIIALV 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,143
Number of Sequences: 37544
Number of extensions: 232996
Number of successful extensions: 776
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)