Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0772.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.56 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   2.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   2.2  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   3.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   3.0  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   3.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   5.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 347 WRTLPGGEFDWGG 385
           WR  P G F WGG
Sbjct: 553 WRFQPWGPFTWGG 565


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 181 SSLKNHYFHCFITYSVGRK 237
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 188 SDDRAXRSPTYATPLMSPYNARLESSSTGSSFPADSP 78
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 160 VGDRFARSSLKNHYFHCFI 216
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 160 VGDRFARSSLKNHYFHCFI 216
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 237 LPPNRVSNETMKVVVFQRRSREXISHLCYTSHVSLQCQTRVKLNRVFFP 91
           +PP  V     K +V   R+ E     C  ++  +QC  +    + FFP
Sbjct: 97  MPPEEVV--IGKEIVAVCRNEEYTGDDCQKTYQYVQCHYKQNPEKFFFP 143


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 155 ATPLMSPYNARLESSSTGSSFP 90
           A  + SP   +   SSTGSS P
Sbjct: 347 AKQMASPEPPKSSESSTGSSIP 368


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 86  QRGKKTLLSLTLVWHCKE 139
           + G KTLLS T +W  ++
Sbjct: 231 KNGMKTLLSETDIWEVEQ 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,208
Number of Sequences: 438
Number of extensions: 2038
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)