Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0772.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   1.1  
At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family...    28   2.0  
At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family...    28   2.0  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   3.5  
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    27   6.1  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    27   6.1  
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom...    26   8.0  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 155 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 45
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At1g14710.2 68414.m01759 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 361 WQCPPXGSRRSFIRXRAFPPGHRSARLERXTVXP-PIYRPRXASAQP 224
           W  PP  S    IR    PP H    +    V P P +RP   + QP
Sbjct: 458 WGPPPSRSPNQHIRHPTGPPKHYPVVIPSTGVLPTPSHRPPNGAVQP 504


>At1g14710.1 68414.m01758 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 601

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = -3

Query: 361 WQCPPXGSRRSFIRXRAFPPGHRSARLERXTVXP-PIYRPRXASAQP 224
           W  PP  S    IR    PP H    +    V P P +RP   + QP
Sbjct: 458 WGPPPSRSPNQHIRHPTGPPKHYPVVIPSTGVLPTPSHRPPNGAVQP 504


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 167 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 60
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 164 PTYATPLMSPYNARLESSSTGSSFPADSPKPVP 66
           P    P  SP + R    S GSS  + SP P+P
Sbjct: 40  PQPPEPPESPPDLRRPEKSIGSSSSSSSPSPIP 72


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 161 TYATPLMSPYNARLESSSTGSS--FPADSP 78
           T+  P +SP +  + SSSTG S  FP  +P
Sbjct: 433 TFNLPALSPSSPEMVSSSTGQSSLFPPSAP 462


>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to Hrs [Rattus
           norvegicus] GI:8547026; contains Pfam profiles PF00790:
           VHS domain, PF03127: GAT domain
          Length = 506

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 119 ESSSTGSSFPADSPKPVPLAVVSLD 45
           +  + G+S PA +P P+PL  ++ D
Sbjct: 264 DDKAKGNSVPATAPTPIPLVSINHD 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,613,192
Number of Sequences: 28952
Number of extensions: 160752
Number of successful extensions: 427
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)