Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0771.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   1.1  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    24   10.0 

>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 100 RTSQLM*LIYHPQVE---VYQYTTYDNTSDFYKN 192
           R  Q+M ++ HP +     Y YTT DN+ + Y N
Sbjct: 72  RELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLN 105


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 375 LAVVMLHSLTIIFTDNRSRXTLLD 304
           LA++ LH L I++ D +    LLD
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLD 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,495
Number of Sequences: 5004
Number of extensions: 20385
Number of successful extensions: 40
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)