Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0771.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0213 - 22037268-22039496                                         27   5.5  
10_08_0735 - 20200229-20200693,20200813-20201823,20202172-202022...    27   7.2  
03_05_0897 - 28605324-28605928,28606725-28606899                       26   9.5  

>03_05_0213 - 22037268-22039496
          Length = 742

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 282 INTVSSLIASVYGAQMYDSILDLLVRKIIXIFIKIASVVICCVLINL 142
           +  V S + S  G Q++D  +DL++ ++  +F   A  V+   L+N+
Sbjct: 109 LGVVHSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNV 155


>10_08_0735 -
           20200229-20200693,20200813-20201823,20202172-20202272,
           20203424-20203562
          Length = 571

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 165 ICCVLINLDLWVIN*LHKLRCPFIIXIVLXXXSLIAFSYXTPVNNNKLG 19
           I C+ I   L ++N L   RC  +  IV    +L  F Y  P+    LG
Sbjct: 270 IACLKIPCTLQLLNFLRVRRCNMLQIIVSDAPNLSTFHYEGPLIQLSLG 318


>03_05_0897 - 28605324-28605928,28606725-28606899
          Length = 259

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 152 STQHMTTLAIFIKMXIIFLTKRSKMLSYICAP 247
           STQH+ T+A      + FL++R + L   C P
Sbjct: 61  STQHIVTVAFRESSRMAFLSRRWQQLWRCCCP 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,054
Number of Sequences: 37544
Number of extensions: 108456
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)