Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0771.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33567| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.60 
SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.4  
SB_23| Best HMM Match : ABC2_membrane (HMM E-Value=1.7)                27   5.6  
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)                      27   7.4  

>SB_33567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = -1

Query: 273 VSSLIASVYGAQMYDSILDLLVRKIIXIFIKIASVVICCVLINLDLWVI 127
           +  LIA  Y   +Y  I+ ++V  ++ + + I  ++I  ++IN+ +W++
Sbjct: 1   MGKLIAPTYEPLVYIIIIIIIV--VVVVIVNIIIIIIIIIIINIIIWLL 47


>SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 206 LTKRSKMLSYICAPYTEAMRDETVFMHMXXFXKSSKVILDLLS 334
           L  R K  S++  P  +  +DE  FM +  + KS  +I+D  S
Sbjct: 223 LNLRCKADSFLFRPKVKESKDENTFMGICLYGKSGVLIIDAQS 265


>SB_23| Best HMM Match : ABC2_membrane (HMM E-Value=1.7)
          Length = 231

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 273 VSSLIASVYGAQMYDSILDLLVRKIIX-IFIKIASVVICCVLINLDLWVIN*LHKLRCPF 97
           + S+I     + +  SI  ++V  I   I I IAS+++  +   + + + + +H   C F
Sbjct: 101 IVSIIVIAIASIIVISIASIIVISIASFIVIAIASIIVIAIASIIVIAIASIIHYCYCSF 160

Query: 96  IIXIV 82
           I+ ++
Sbjct: 161 IVIVI 165


>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
          Length = 576

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 128 ITHKSRFISTQHMTTLAIFIKMXIIFLTKRSKM 226
           ++HK R ++  H   LA+F K   I   +R KM
Sbjct: 82  VSHKKRVLAKDHSGALALFSKFNQIQQIRRVKM 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,486,163
Number of Sequences: 59808
Number of extensions: 147979
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)