Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0771.Seq
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83105-8|CAB05488.1|  496|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z83105-8|CAB05488.1|  496|Caenorhabditis elegans Hypothetical
           protein F14H3.8 protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 345 IIFTDNRSRXTLLDXXNXHICINTVSSLIASVYGAQMYDSILDLLVRKIIXIFI 184
           + + D++ + TL+   N H  +    +   +V+ A++ D +L     KII  FI
Sbjct: 69  VFYYDSKGKNTLITCENVHKSVLVEENDFVTVFFAELKDILLSETSIKIIYFFI 122


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 372 AVVMLHSLTIIFTDNRSRXTLLDXXNXHICINTVSSLIASVYGAQMYDSILDLL 211
           AV ++  L I F    +  ++L+     I + TVSS I +VY  Q Y    DLL
Sbjct: 547 AVFIVQFLCIPFPSLLASASILNIIIASISLFTVSSAITNVYYLQRYLQASDLL 600


>AF016666-4|AAB66082.1|  331|Caenorhabditis elegans Hypothetical
           protein B0281.3 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 214 FGKEDNXHFYKNR*CCHMLC 155
           F  ED  H  +N  CCH LC
Sbjct: 43  FSSEDGDHSPRNLKCCHTLC 62


>Z81581-7|CAB04659.1|  269|Caenorhabditis elegans Hypothetical
           protein T02E1.7 protein.
          Length = 269

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 152 STQHMTTLAIFIKMXIIFLTKRSKMLSYICAPYTEAMRDETVFMHMXXFXKSSKVILDLL 331
           +T H+ T  I I   I+ L   + +     A YT+  RDE           + +V L+L+
Sbjct: 112 TTYHLLTRNISIVAAIMLLVAENMLRKPKPANYTQLPRDEHEIEVTSVLLAACRVCLNLM 171

Query: 332 SVNMM 346
            ++M+
Sbjct: 172 LISMV 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,111,371
Number of Sequences: 27780
Number of extensions: 114746
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)