Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0769.Seq
(437 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 132 4e-30
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 79 5e-14
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 67 2e-10
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 57 2e-07
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 56 4e-07
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 52 5e-06
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 50 2e-05
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 45 6e-04
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 41 0.010
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.071
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 0.87
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 34 1.2
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 33 2.0
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 32 4.7
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 32 6.2
UniRef50_Q9C2M7 Cluster: Related to HFB30; n=2; Sordariales|Rep:... 32 6.2
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 31 8.1
UniRef50_A2WZF3 Cluster: DNA-directed RNA polymerase; n=1; Oryza... 31 8.1
UniRef50_A0DGL9 Cluster: Chromosome undetermined scaffold_5, who... 31 8.1
UniRef50_A2QT05 Cluster: Putative uncharacterized protein; n=1; ... 31 8.1
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 31 8.1
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 132 bits (318), Expect = 4e-30
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SIHHAR+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +K
Sbjct: 121 KSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKK 180
Query: 77 GQGGGAANDXE 45
GQGG A D E
Sbjct: 181 GQGGAGAGDDE 191
Score = 50.0 bits (114), Expect = 2e-05
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
+VRIGVLDE +M L L IEDFLERRLQTQVF GLA
Sbjct: 81 LVRIGVLDEGKMKLDYI-LGLKIEDFLERRLQTQVFKLGLA 120
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 78.6 bits (185), Expect = 5e-14
Identities = 39/71 (54%), Positives = 47/71 (66%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SI HA +L+ HIR+ KQVV+I F V LDS KH DF GGG PG VKRKN++K
Sbjct: 126 KSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSRKHTDFFRHCLNGGGYPGSVKRKNVKK 185
Query: 77 GQGGGAANDXE 45
G+GG A D E
Sbjct: 186 GRGGAGAGDDE 196
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 66.9 bits (156), Expect = 2e-10
Identities = 33/55 (60%), Positives = 38/55 (69%)
Frame = -1
Query: 209 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDXE 45
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG + E
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEE 81
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 56.8 bits (131), Expect = 2e-07
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLR 81
+SIHHAR+LIR + I+V KQVV++PSF+VR++S I + +P GR KRKN
Sbjct: 120 KSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNH 179
Query: 80 KGQ 72
G+
Sbjct: 180 AGK 182
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 55.6 bits (128), Expect = 4e-07
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = -1
Query: 185 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 60
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 52.0 bits (119), Expect = 5e-06
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 129
++IH ARILI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 122 KTIHEARILIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 50.0 bits (114), Expect = 2e-05
Identities = 24/61 (39%), Positives = 41/61 (67%)
Frame = +3
Query: 69 TLSLAEVLPLDTSRTTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMM 248
T S + L ++ +++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S ++
Sbjct: 10 TTSSSSSLSGHSTWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVV 69
Query: 249 D 251
+
Sbjct: 70 N 70
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 45.2 bits (102), Expect = 6e-04
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 120
+S+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 125 KSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 41.1 bits (92), Expect = 0.010
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = -1
Query: 224 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 60
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+ A
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVA 189
Query: 59 ANDXE 45
D +
Sbjct: 190 GEDDD 194
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.071
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -1
Query: 167 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 60
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 0.87
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +1
Query: 124 NGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA 243
+G+ KSMC S RT G FT CL TRI RIK A
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRA 97
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 34.3 bits (75), Expect = 1.2
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = -2
Query: 373 RIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLAN 254
RIG+L E + + +L + D LERRLQT V+ GLAN
Sbjct: 76 RIGILSEEERLDDVLSL--EVTDVLERRLQTVVYREGLAN 113
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 33.5 bits (73), Expect = 2.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 242 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 96
AR LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 123 ARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 32.3 bits (70), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 267 LAWRIHPSCQNFDPAKAYSCPQASCEHPIIYCAP 166
L +HPSC + D + CP +CE P + C P
Sbjct: 134 LCGNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 31.9 bits (69), Expect = 6.2
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -2
Query: 325 LVXXIEDFLERRLQTQVFXAGLA 257
L +E+FLERRLQT VF +G+A
Sbjct: 27 LALTVENFLERRLQTIVFKSGMA 49
>UniRef50_Q9C2M7 Cluster: Related to HFB30; n=2; Sordariales|Rep:
Related to HFB30 - Neurospora crassa
Length = 781
Score = 31.9 bits (69), Expect = 6.2
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 122 GGGRPGRVKRKNLRKGQGGGAAN 54
GGGR GR + N R GQG G AN
Sbjct: 648 GGGRGGRGRGDNARGGQGAGGAN 670
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 31.5 bits (68), Expect = 8.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 242 ARILIRQRHIRVRKQVVNIPSF 177
AR L+ RHI V Q+VN+PSF
Sbjct: 111 ARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A2WZF3 Cluster: DNA-directed RNA polymerase; n=1; Oryza
sativa (indica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. indica (Rice)
Length = 1507
Score = 31.5 bits (68), Expect = 8.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 122 GGGRPGRVKRKNLRKGQGGGAA 57
G RPG RKN +GQGGG A
Sbjct: 1306 GSSRPGEWNRKNNNRGQGGGRA 1327
>UniRef50_A0DGL9 Cluster: Chromosome undetermined scaffold_5, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_5,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 542
Score = 31.5 bits (68), Expect = 8.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 146 QCACQSPGAQ*MMGCSQLAC--GHEYAFAGSKFWHDGW-IRQASXEHLRLQTTLQEV 307
QC+ + + M GC+ ++C GHE+ +A K W G R + L T QE+
Sbjct: 387 QCSMCNRWIEKMYGCNHISCPCGHEFCYACGKQWIKGMECRCIETQQNELLQTQQEI 443
>UniRef50_A2QT05 Cluster: Putative uncharacterized protein; n=1;
Aspergillus niger|Rep: Putative uncharacterized protein
- Aspergillus niger
Length = 161
Score = 31.5 bits (68), Expect = 8.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 224 QRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAAND 51
QR I++ Q + +P R D G +D + PF G +PGR++R + G + D
Sbjct: 71 QRRIKLNAQDLRVP----RTDPG--LDRHARRPFDGTQPGRIRRVTRKPHSGVSVSTD 122
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 31.5 bits (68), Expect = 8.1
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = -2
Query: 382 VMVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLAN 254
++ R G+L + L L +E LERRLQT VF GLAN
Sbjct: 76 ILNRYGILLKEDATLD-DVLSLNLESILERRLQTLVFRKGLAN 117
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 412,589,095
Number of Sequences: 1657284
Number of extensions: 7879581
Number of successful extensions: 18608
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18591
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -