Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0769.Seq
         (437 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   0.96 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   5.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   5.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   9.0  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   9.0  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   9.0  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   9.0  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   9.0  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    20   9.0  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    20   9.0  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   9.0  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ   P H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLAPTHLQSPNTQTHP 95


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 249 PSCQNFDPAKAYSCP 205
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 249 PSCQNFDPAKAYSCP 205
           P C+N + A  ++CP
Sbjct: 144 PECKNEEVAGGFTCP 158


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 243 CQNFDPAKAYSCPQASCE 190
           C+N  P     C +A+CE
Sbjct: 878 CENGKPTCWRECDKATCE 895


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 17  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 51


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 13/35 (37%)
 Frame = +1

Query: 256 SPGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHP 360
           +PG    P   D     PQ     H+   ++  HP
Sbjct: 61  APGHGLQPTMGDYTQLQPQRLASTHLQSPNTQTHP 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,177
Number of Sequences: 336
Number of extensions: 1837
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)