Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0769.Seq
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   110   8e-26
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   108   4e-25
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   2.2  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   5.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.1  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  110 bits (265), Expect = 8e-26
 Identities = 49/71 (69%), Positives = 58/71 (81%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
           +SIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR 
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRS 179

Query: 77  GQGGGAANDXE 45
            Q GG   + E
Sbjct: 180 QQEGGEGEEAE 190



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -2

Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
           +VR+G+LDE +M L    L   IEDFLERRLQTQVF  GLA
Sbjct: 80  LVRLGILDESRMKLDY-VLALRIEDFLERRLQTQVFKLGLA 119



 Score = 29.9 bits (64), Expect = 0.18
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 429 EKDPXRLFEGNALXR 385
           EKDP RLFEGNA+ R
Sbjct: 64  EKDPKRLFEGNAIIR 78


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  108 bits (259), Expect = 4e-25
 Identities = 47/64 (73%), Positives = 56/64 (87%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
           +SIHHAR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR 
Sbjct: 120 KSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRS 179

Query: 77  GQGG 66
            +GG
Sbjct: 180 QEGG 183



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -2

Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
           +VR+G+LDE +M L    L   IEDFLERRLQTQVF  GLA
Sbjct: 80  LVRLGILDETRMKLDY-VLALRIEDFLERRLQTQVFKLGLA 119



 Score = 29.9 bits (64), Expect = 0.18
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 429 EKDPXRLFEGNALXR 385
           EKDP RLFEGNA+ R
Sbjct: 64  EKDPKRLFEGNAIIR 78


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 165 GLWQAH*LLSEISIRWRSSWTCQEEEPPQGTGWR 64
           G + A  +L ++S  W+ +W  +E++      WR
Sbjct: 383 GRYIAQRILGDLSEEWKDAWRWREDDKASELKWR 416


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 189 HPIIYCAPGLWQAH*LLSEISIRWRSSWTCQEEE 88
           HP +    GL Q H +   ++  W SSW   ++E
Sbjct: 321 HPKVTLIDGLVQLHVVPHHLASDWISSWKKNKQE 354


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 250 MDSPGQLXTPASADDAPRSPQXXXPKHII 336
           +D+P  + TPA   DA  SPQ     H +
Sbjct: 28  LDTPLAIHTPAKGFDADLSPQSLYDLHTV 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,487
Number of Sequences: 5004
Number of extensions: 29386
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)