Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0769.Seq
(437 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 114 3e-26
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 114 3e-26
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 112 1e-25
07_03_1357 - 25982861-25983068,25983354-25983361 69 2e-12
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 0.71
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 29 1.6
07_03_0366 + 17321948-17322331 29 2.2
08_01_0568 - 5052608-5052937 28 2.9
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 28 3.8
03_06_0653 - 35305279-35306163 27 6.6
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 27 8.7
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 114 bits (274), Expect = 3e-26
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 122 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 181
Query: 77 GQGGGAANDXE 45
GGG + E
Sbjct: 182 ASGGGGDGEEE 192
Score = 34.7 bits (76), Expect = 0.033
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
M R G+L + Q L L +E+FL RRLQT VF AG+A
Sbjct: 82 MNRYGLLADGQNKLDY-VLALTVENFLARRLQTLVFKAGMA 121
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 114 bits (274), Expect = 3e-26
Identities = 51/71 (71%), Positives = 60/71 (84%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 145 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 204
Query: 77 GQGGGAANDXE 45
GGG + E
Sbjct: 205 ASGGGGDGEEE 215
Score = 34.7 bits (76), Expect = 0.033
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
M R G+L + Q L L +E+FL RRLQT VF AG+A
Sbjct: 105 MNRYGLLADGQNKLDY-VLALTVENFLARRLQTLVFKAGMA 144
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 112 bits (270), Expect = 1e-25
Identities = 50/65 (76%), Positives = 58/65 (89%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K
Sbjct: 338 KSIHHARVLIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKK 397
Query: 77 GQGGG 63
GGG
Sbjct: 398 ASGGG 402
Score = 34.7 bits (76), Expect = 0.033
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
M R G+L + Q L L +E+FL RRLQT VF AG+A
Sbjct: 298 MNRYGLLADGQNKLDY-VLALTVENFLARRLQTLVFKAGMA 337
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 68.9 bits (161), Expect = 2e-12
Identities = 34/56 (60%), Positives = 39/56 (69%)
Frame = -1
Query: 212 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGAANDXE 45
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN + GGG + E
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKNQKASGGGGDGEEEE 58
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 0.71
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 122 GGGRPGRVKRKNLRKGQGGG 63
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAG 263
M R G+L E Q L L +E+FL+ RLQT VF G
Sbjct: 71 MNRYGLLGEGQNKLDY-VLALTVENFLQCRLQTIVFKNG 108
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 257 ESIHHARILIRQRHI 213
+SIHH +LIRQ HI
Sbjct: 111 KSIHHDHVLIRQHHI 125
>07_03_0366 + 17321948-17322331
Length = 127
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 158 GKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 60
G ++ +S GGG R +R+ R+G GGGA
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGA 64
>08_01_0568 - 5052608-5052937
Length = 109
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 125 FGGGRPGRVKRKNLRKGQGGGAANDXE 45
+GGGRPG + RK + GG A D E
Sbjct: 80 WGGGRPGGGSKAEGRKRRWGGTAADAE 106
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 259 PGQLXTPASADDAPRSPQXXXPKHIIRXSSVXHPVLQYEP*RPXKGIT 402
PG TPA+A APRS P ++I + H Q +P R K ++
Sbjct: 149 PGSPPTPAAAVAAPRSGASHPPIYVI--PATPHGAAQGDPPRHGKKVS 194
>03_06_0653 - 35305279-35306163
Length = 294
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 155 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 63
K++ L GG+P R +R +R GGG
Sbjct: 19 KYLQRKLWKRINGGKPRRKRRPEVRSASGGG 49
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 239 RILIRQRHIRVRKQVVN--IPSFIVRLDSGKHIDFSLKSPFG 120
R L+ + I +R +N IPS+I +D+ KH+D S G
Sbjct: 281 RELVSMKTIILRNCSINGSIPSYIGNMDNLKHLDLSFNKLTG 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,038
Number of Sequences: 37544
Number of extensions: 240662
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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