Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0769.Seq
         (437 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             127   3e-30
SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   6.8  
SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  127 bits (307), Expect = 3e-30
 Identities = 55/71 (77%), Positives = 64/71 (90%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
           +SIHHAR+LIRQRHIRVRKQ+VN+PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++K
Sbjct: 118 KSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKK 177

Query: 77  GQGGGAANDXE 45
           GQGG    D +
Sbjct: 178 GQGGSGGEDED 188



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 27/41 (65%), Positives = 29/41 (70%)
 Frame = -2

Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
           +VRIGVLDE +  L    L   IEDFLERRLQTQVF  GLA
Sbjct: 78  LVRIGVLDESRKKLDY-VLGLRIEDFLERRLQTQVFKLGLA 117



 Score = 30.7 bits (66), Expect = 0.55
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -3

Query: 429 EKDPXRLFEGNALXR 385
           EKDP RLFEGNAL R
Sbjct: 62  EKDPRRLFEGNALLR 76


>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 143  FSLKSPFGGGRPGRVKRKNLRKGQGGGAA 57
            F L  PF  G PGR+ ++N+ + + GG A
Sbjct: 1096 FELLKPFIFGYPGRLGQRNVARVRAGGGA 1124


>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1020

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = -3

Query: 243  CQNFDPAKAYSCPQASCEHP-IIYCAPGLWQAH*LLSEISIRWRSSWTCQEEEPPQG 76
            C NFD    + C   S  H   IYC  G       L  +++     W C+ + P  G
Sbjct: 953  CMNFDGG--FGCRPGSESHAGQIYCCLGALSITHSLHHVNVDMLGWWLCERQLPSGG 1007


>SB_28310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 134 SERSQCACQSPGAQ*MMGCSQLACGHE 214
           S +SQ  C S     ++GC+QL C H+
Sbjct: 226 STQSQLKCYSGHVIPILGCAQLTCKHK 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,088
Number of Sequences: 59808
Number of extensions: 258722
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)