Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0769.Seq
(437 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014296-1680|AAN11946.1| 195|Drosophila melanogaster CG3395-PD... 130 6e-31
AE014296-1679|AAF50249.1| 195|Drosophila melanogaster CG3395-PA... 130 6e-31
X69677-1|CAB41492.1| 197|Drosophila melanogaster ribosomal prot... 60 2e-09
AY061396-1|AAL28944.1| 137|Drosophila melanogaster LD32106p pro... 50 1e-06
AE014296-1681|AAF50250.1| 137|Drosophila melanogaster CG3395-PB... 50 1e-06
AY113393-1|AAM29398.1| 891|Drosophila melanogaster RE07247p pro... 30 1.2
AE014296-2707|AAF49484.2| 891|Drosophila melanogaster CG4998-PA... 30 1.2
AE014296-2706|ABI31256.1| 1185|Drosophila melanogaster CG4998-PB... 30 1.2
AE014296-1104|AAF50670.1| 1320|Drosophila melanogaster CG10226-P... 29 3.7
>AE014296-1680|AAN11946.1| 195|Drosophila melanogaster CG3395-PD,
isoform D protein.
Length = 195
Score = 130 bits (315), Expect = 6e-31
Identities = 62/73 (84%), Positives = 67/73 (91%), Gaps = 2/73 (2%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SIHHAR+LIRQRHIRVRKQVVNIPSF+VRLDS KHIDFSLKSPFGGGRPGRVKRKNL+K
Sbjct: 122 KSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
Query: 77 GQ--GGGAANDXE 45
Q GGGAA + E
Sbjct: 182 NQGGGGGAAEEEE 194
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
+VRIGVLDE +M L L IEDFLERRLQTQVF GLA
Sbjct: 82 LVRIGVLDESRMKLDY-VLGLKIEDFLERRLQTQVFKLGLA 121
>AE014296-1679|AAF50249.1| 195|Drosophila melanogaster CG3395-PA,
isoform A protein.
Length = 195
Score = 130 bits (315), Expect = 6e-31
Identities = 62/73 (84%), Positives = 67/73 (91%), Gaps = 2/73 (2%)
Frame = -1
Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
+SIHHAR+LIRQRHIRVRKQVVNIPSF+VRLDS KHIDFSLKSPFGGGRPGRVKRKNL+K
Sbjct: 122 KSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLKK 181
Query: 77 GQ--GGGAANDXE 45
Q GGGAA + E
Sbjct: 182 NQGGGGGAAEEEE 194
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
+VRIGVLDE +M L L IEDFLERRLQTQVF GLA
Sbjct: 82 LVRIGVLDESRMKLDY-VLGLKIEDFLERRLQTQVFKLGLA 121
>X69677-1|CAB41492.1| 197|Drosophila melanogaster ribosomal protein
protein.
Length = 197
Score = 59.7 bits (138), Expect = 2e-09
Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = -1
Query: 308 GLLGASSADAGVXSWPGESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI-DFSLK 132
GLLGASSADAGV + +SIHHAR+LIRQR + + IPSF+V + +FSLK
Sbjct: 103 GLLGASSADAGVQAGLAKSIHHARVLIRQRTFVLASRWSTIPSFVVTPGLPEATSNFSLK 162
Query: 131 SPFGGGRPGRVKRK 90
P RP R +++
Sbjct: 163 MPL-RTRPSRSRQE 175
>AY061396-1|AAL28944.1| 137|Drosophila melanogaster LD32106p
protein.
Length = 137
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
+VRIGVLDE +M L L IEDFLERRLQTQVF GLA
Sbjct: 82 LVRIGVLDESRMKLDY-VLGLKIEDFLERRLQTQVFKLGLA 121
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 257 ESIHHARILIRQRHIR 210
+SIHHAR+LIRQRHIR
Sbjct: 122 KSIHHARVLIRQRHIR 137
>AE014296-1681|AAF50250.1| 137|Drosophila melanogaster CG3395-PB,
isoform B protein.
Length = 137
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/41 (68%), Positives = 30/41 (73%)
Frame = -2
Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
+VRIGVLDE +M L L IEDFLERRLQTQVF GLA
Sbjct: 82 LVRIGVLDESRMKLDY-VLGLKIEDFLERRLQTQVFKLGLA 121
Score = 35.1 bits (77), Expect = 0.042
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 257 ESIHHARILIRQRHIR 210
+SIHHAR+LIRQRHIR
Sbjct: 122 KSIHHARVLIRQRHIR 137
>AY113393-1|AAM29398.1| 891|Drosophila melanogaster RE07247p
protein.
Length = 891
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 221 FAGSKFWHDGWIRQASXEHLRLQTTLQEV 307
F G++ W GW + A EH + Q L+EV
Sbjct: 767 FTGARCWTTGWGKDAFGEHGKYQNILKEV 795
>AE014296-2707|AAF49484.2| 891|Drosophila melanogaster CG4998-PA,
isoform A protein.
Length = 891
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 221 FAGSKFWHDGWIRQASXEHLRLQTTLQEV 307
F G++ W GW + A EH + Q L+EV
Sbjct: 767 FTGARCWTTGWGKDAFGEHGKYQNILKEV 795
>AE014296-2706|ABI31256.1| 1185|Drosophila melanogaster CG4998-PB,
isoform B protein.
Length = 1185
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 221 FAGSKFWHDGWIRQASXEHLRLQTTLQEV 307
F G++ W GW + A EH + Q L+EV
Sbjct: 1061 FTGARCWTTGWGKDAFGEHGKYQNILKEV 1089
>AE014296-1104|AAF50670.1| 1320|Drosophila melanogaster CG10226-PA
protein.
Length = 1320
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 260 GESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS-PFGGGRPGRV 99
GE+I H + Q+ + + N FI+ L G D S K GG+ R+
Sbjct: 507 GENIRHGKPEATQKEVEDAAKAANAHDFIIALHKGYDTDISEKGVQLSGGQRQRI 561
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,926,834
Number of Sequences: 53049
Number of extensions: 385864
Number of successful extensions: 1000
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -