Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0769.Seq
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   117   3e-27
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   1.1  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   2.0  
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    28   3.4  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  117 bits (282), Expect = 3e-27
 Identities = 52/69 (75%), Positives = 62/69 (89%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
           +SIHHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRK
Sbjct: 120 KSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRK 179

Query: 77  GQGGGAAND 51
           G G G  ++
Sbjct: 180 GDGAGGDDE 188



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -2

Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
           +V+IGVLDE +M L    L   +EDFLERRLQTQVF  GLA
Sbjct: 80  LVKIGVLDETKMKLDY-VLGLKVEDFLERRLQTQVFKLGLA 119



 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 429 EKDPXRLFEGNALXR 385
           +KDP RLFEGNAL R
Sbjct: 64  DKDPKRLFEGNALLR 78


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 188 CSQLACGHEYAFAGSKFWHDGWIRQASXEHLRLQTTLQEVLN 313
           C +  CG E+ F   K WH+G  R  S    +L+   +  +N
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG-TRTCSKTFEQLKKITENEIN 192


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 185 GCSQLACGHEYAFAGSKFWH 244
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 129
           ES+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S
Sbjct: 121 ESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKAS 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,281,264
Number of Sequences: 27780
Number of extensions: 181968
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)