Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0769.Seq
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   109   8e-25
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   107   2e-24
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   0.59 
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    27   5.5  
At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP...    27   7.3  
At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP...    27   7.3  
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai...    27   7.3  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  109 bits (262), Expect = 8e-25
 Identities = 52/72 (72%), Positives = 61/72 (84%), Gaps = 4/72 (5%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN--- 87
           +SIHH+R+LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N   
Sbjct: 122 KSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKS 181

Query: 86  -LRKGQGGGAAN 54
             +K  GGG A+
Sbjct: 182 ASKKASGGGDAD 193



 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = -2

Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
           M R G+LDE Q  L    L   +E+FLERRLQT VF +G+A
Sbjct: 82  MNRYGLLDESQNKLDY-VLALTVENFLERRLQTIVFKSGMA 121


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  107 bits (258), Expect = 2e-24
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = -1

Query: 257 ESIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 78
           +SIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R 
Sbjct: 122 KSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERA 181

Query: 77  GQGGGAANDXE 45
           G    +  D +
Sbjct: 182 GAKKASGGDGD 192



 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 22/41 (53%), Positives = 27/41 (65%)
 Frame = -2

Query: 379 MVRIGVLDEXQMXLGLCALVXXIEDFLERRLQTQVFXAGLA 257
           M R G+LDE Q  L    L   +E+FLERRLQT VF +G+A
Sbjct: 82  MNRYGLLDETQNKLDY-VLALTVENFLERRLQTIVFKSGMA 121


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = +3

Query: 114 TSTEWRFQREVNVLARVQAHN 176
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 282 RRCS*LAWRIHPSCQNFDPAKAYSCPQASCEH 187
           RR   L W++          K Y CP+ SC H
Sbjct: 82  RRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVH 113


>At5g43380.2 68418.m05303 serine/threonine protein phosphatase PP1
           isozyme 7 (TOPP7) identical to SP|O82733
           Serine/threonine protein phosphatase PP1 isozyme 7 (EC
           3.1.3.16) {Arabidopsis thaliana}
          Length = 327

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 288 CRRRCS*LAWRIHPSCQNFDPAKAYSCPQASCEH 187
           C+RR S   WRI   C N  P  A    +  C H
Sbjct: 136 CKRRFSVKIWRIFTDCFNCLPVAALIDERIFCMH 169


>At5g43380.1 68418.m05302 serine/threonine protein phosphatase PP1
           isozyme 7 (TOPP7) identical to SP|O82733
           Serine/threonine protein phosphatase PP1 isozyme 7 (EC
           3.1.3.16) {Arabidopsis thaliana}
          Length = 331

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -3

Query: 288 CRRRCS*LAWRIHPSCQNFDPAKAYSCPQASCEH 187
           C+RR S   WRI   C N  P  A    +  C H
Sbjct: 136 CKRRFSVKIWRIFTDCFNCLPVAALIDERIFCMH 169


>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
           Pfam PF04833: Phytochelatin synthetase-like conserved
           region
          Length = 653

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 111 TTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGFARPA 269
           T +  +RF+ E+ VL   +   K W V    A   + +   N+ + DG + PA
Sbjct: 60  TKNQPYRFESEITVLNNGRDELKSWQVFVKFAHREILVSATNAVLSDGSSLPA 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,329
Number of Sequences: 28952
Number of extensions: 173262
Number of successful extensions: 429
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)