Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0764.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   0.94 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   0.94 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   5.0  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   5.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.7  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 242 TRWTTVFLRDEVKKHVNLKE 301
           TR+  +F+R+EV   +NL E
Sbjct: 149 TRYPDIFMREEVAVKINLPE 168


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 242 TRWTTVFLRDEVKKHVNLKE 301
           TR+  +F+R+EV   +NL E
Sbjct: 91  TRYPDIFMREEVALKINLPE 110


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 367  TPPIYTLTTTASPLNH---TXTDTTRQGILNWPIEYT 468
            T P +T TTT         T + TTR    NWP + T
Sbjct: 1048 TSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGT 1084



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +3

Query: 318  WSQRTGRKTSLPFHPVNTTDLY---FDYYXFPPESYXYRYDAPGNPELANRIH-EKLKNS 485
            W ++TG    L +HP +    Y   F    +  E    R    G P        EK +N 
Sbjct: 1596 WDKQTGHVAPLYYHPEDEVVFYNANFSINYWISEGVPRRKIVMGMPLYGQSFRLEKPENH 1655

Query: 486  GIDSK 500
            G+++K
Sbjct: 1656 GLNAK 1660


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 462 FYWPIQDSLARRICXCM 412
           FYW     + R +C C+
Sbjct: 322 FYWSFGFLIVRTVCLCL 338


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 462 FYWPIQDSLARRICXCM 412
           FYW     + R +C C+
Sbjct: 322 FYWSFGFLIVRTVCLCL 338


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 360 PVNTTDLYFDYYXFPP 407
           P++T+ L  D+Y F P
Sbjct: 211 PISTSSLPSDFYRFSP 226


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 360 PVNTTDLYFDYYXFPP 407
           P++T+ L  D+Y F P
Sbjct: 103 PISTSSLPSDFYRFSP 118


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 EPKRIESDNTGHSALGGRRRYHFIR 363
           EPKR  +  T H  L   + +H+ R
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNR 256


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 EPKRIESDNTGHSALGGRRRYHFIR 363
           EPKR  +  T H  L   + +H+ R
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNR 256


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 241 SLSPNSGRGPPPWLTNRAGATVAIVLKVPVEY 146
           S+  N+   PPP        TV  V K+P  Y
Sbjct: 725 SMENNAPPPPPPPRVESFAETVRTVSKIPPLY 756


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -3

Query: 565 CRGINQKHRNENSVVXTSFGSNLE 494
           C+G  ++   +N+V    +G+N E
Sbjct: 208 CKGFFRRSITKNAVYQCKYGNNCE 231


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 316 YYRFQFF*VHMLF 278
           YY F  F VH+LF
Sbjct: 117 YYAFIIFTVHLLF 129


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 462 FYWPIQDSLARRICXCM 412
           FYW     + R +C C+
Sbjct: 320 FYWSFALLITRIVCLCL 336


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 289 EPKRIESDNTGHSALGGRRRYHFIR 363
           EPKR  +  T H  L   + +H+ R
Sbjct: 232 EPKRQRTAYTRHQILELEKEFHYNR 256


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,155
Number of Sequences: 336
Number of extensions: 2807
Number of successful extensions: 17
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)