Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0764.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    34   0.020
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    27   1.8  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.1  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   5.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   5.4  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   5.4  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   7.1  

>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 378 LYFDYYXFPPESYXYRYDAPGNPELANRIHEKLKNSGIDSK 500
           L++DYY FP   Y  ++ + G+  +A++I   LK   I +K
Sbjct: 88  LFYDYYGFPDYLYQIKFHSKGSKRIADQIISALKEYQIPAK 128


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 196 SSTMEVDLCRCWGTRNTLDY 255
           SST  +DLC+  G  +TLDY
Sbjct: 197 SSTENLDLCKSLGATHTLDY 216


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 230 GGQGTRWTTVFLRDEVKKHVN--LKELKAIILVTAH 331
           GGQGT WTT+    E+ +     L   +A I +T H
Sbjct: 172 GGQGTMWTTILQMGELIETAKSLLDREEARIFITHH 207


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 556 FRGRTFXIVQISVLNSQDPKKHL 624
           F G+TF I+Q +VL + +  +HL
Sbjct: 118 FNGKTFKILQATVLEASEIMQHL 140


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 161 FKNNGHGCSCSIRQPWRWTSAAVGGQGTRWTTVFLRDEVKKHVNLKELKAI 313
           F +  +G + ++ + + +     GG G  +T   LRD + K  N+  +  I
Sbjct: 399 FMDGPYGTTSNVFKEYSYVLLIAGGVGFSYTLPILRDLILKECNVTSITFI 449


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 393 YXFPPESYXYRYDAPGNPELANRIHEKLKNSGIDSKLDPN 512
           Y   PE +   Y   G   LAN  + K   +G+ +K +P+
Sbjct: 227 YEQDPEGFVNPYSKRGAAALANSENNKGSEAGVSAKTNPD 266


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 465 HEKLKNSGIDSKLDPNXVXTTEFSFRCF 548
           H ++    +DS+LDPN + T  F  + +
Sbjct: 330 HARIDFDNVDSRLDPNILTTFPFQVQFY 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,002
Number of Sequences: 5004
Number of extensions: 44070
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)