Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0764.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1543 - 38138253-38138855,38139000-38139239                       34   0.11 
02_05_1277 - 35408097-35409080                                         29   4.2  
05_05_0392 + 24629528-24630442                                         28   7.4  

>01_06_1543 - 38138253-38138855,38139000-38139239
          Length = 280

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 NTTDLYFDYYXFPPESYXYRYDAPGNPELANRIHEKLKNSG 488
           N T   F+ Y FP   +   Y APG P++A +  E L+ +G
Sbjct: 63  NDTIHDFEGYGFPKSMFQLEYPAPGAPDVAKKAKELLEQAG 103


>02_05_1277 - 35408097-35409080
          Length = 327

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +1

Query: 328 ALGGRRRYHFIR*TPPIYTLTTTA-SPLNHTXTDTTRQGILNWPIEYTKNLKTP 486
           ALGG  R H     PP    TT A +    T  DT ++G  +  +E   NL  P
Sbjct: 229 ALGGHMRRHRPLHAPPERAATTAATTAATATAPDTKKEGSTSINLELDLNLPAP 282


>05_05_0392 + 24629528-24630442
          Length = 304

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 268 SQEYSSPACSLSPNSGRGPPP 206
           +QE +SPA S +    RGPPP
Sbjct: 238 AQETNSPASSTTTTQSRGPPP 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,874,568
Number of Sequences: 37544
Number of extensions: 290612
Number of successful extensions: 879
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)