Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0764.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   3.8  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   3.8  
AF125448-4|AAN63406.1|  453|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z92829-9|CAB07349.1|  360|Caenorhabditis elegans Hypothetical
           protein F10A3.13 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = -3

Query: 496 ESIPEFLSFSCILLANSGFPGASYLYXYDSGGKX**SKYKSVVFTG*NGNDVFLPVRCDQ 317
           E IPEFL   C+      + G  Y Y  +S GK       S V  G  G +V L +    
Sbjct: 165 EVIPEFLDVYCLHPNEYTYTGPHYYYTDNSTGKW-KFHNPSFVAEGYTGGNVALTIISVA 223

Query: 316 YYRFQFF 296
           Y+ +Q +
Sbjct: 224 YFGYQTY 230


>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 426 YDAPGNPELANRIHEKLKNSGIDSKLDPN 512
           YD+  NPE++N+I  KL    +D +LDPN
Sbjct: 23  YDSCFNPEISNQIFTKL--VALDIELDPN 49


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 618  LLWILTVQNGYLYYGKCPAAELIRSIGTKTP 526
            L W++ ++ G+L YG  P+     S+G + P
Sbjct: 1344 LQWLMKIRIGFLTYGSSPSLRAASSLGDQHP 1374


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 618  LLWILTVQNGYLYYGKCPAAELIRSIGTKTP 526
            L W++ ++ G+L YG  P+     S+G + P
Sbjct: 1344 LQWLMKIRIGFLTYGSSPSLRAASSLGDQHP 1374


>AF125448-4|AAN63406.1|  453|Caenorhabditis elegans Hypothetical
           protein H14E04.2d protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 550 QKHRNENSVVXTSFGSNLESIPEFLSFSCILLANSGFPG----ASYLYXYDSGG 401
           + HRN  +   TS G+ L   P     SC+ +           +S ++ Y SGG
Sbjct: 114 EAHRNAAAAASTSAGNGLSEQPTVAIISCLFVEKQAIDALIEESSTIHKYKSGG 167


>AF125448-3|AAD12809.1|  575|Caenorhabditis elegans Hypothetical
           protein H14E04.2a protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 550 QKHRNENSVVXTSFGSNLESIPEFLSFSCILLANSGFPG----ASYLYXYDSGG 401
           + HRN  +   TS G+ L   P     SC+ +           +S ++ Y SGG
Sbjct: 236 EAHRNAAAAASTSAGNGLSEQPTVAIISCLFVEKQAIDALIEESSTIHKYKSGG 289


>AF125448-2|AAL32228.1|  582|Caenorhabditis elegans Hypothetical
           protein H14E04.2c protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 550 QKHRNENSVVXTSFGSNLESIPEFLSFSCILLANSGFPG----ASYLYXYDSGG 401
           + HRN  +   TS G+ L   P     SC+ +           +S ++ Y SGG
Sbjct: 243 EAHRNAAAAASTSAGNGLSEQPTVAIISCLFVEKQAIDALIEESSTIHKYKSGG 296


>AF125448-1|AAD12814.1|  578|Caenorhabditis elegans Hypothetical
           protein H14E04.2b protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 550 QKHRNENSVVXTSFGSNLESIPEFLSFSCILLANSGFPG----ASYLYXYDSGG 401
           + HRN  +   TS G+ L   P     SC+ +           +S ++ Y SGG
Sbjct: 239 EAHRNAAAAASTSAGNGLSEQPTVAIISCLFVEKQAIDALIEESSTIHKYKSGG 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,665,089
Number of Sequences: 27780
Number of extensions: 250086
Number of successful extensions: 666
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)