Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0764.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.83 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.4  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +3

Query: 429 DAPG--NPELANRIHEKLKNS 485
           D PG  N EL  R+H KL+N+
Sbjct: 349 DRPGLRNTELVERMHNKLRNA 369


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 471 FRVFYWPIQDSLARRIC 421
           FR+   P++D++A  IC
Sbjct: 397 FRILTMPVRDAIAGTIC 413


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 579 YGKCPAAELIRSIGTKTPWSQ 517
           YG+C    +  S    TPWS+
Sbjct: 554 YGRCKREGIELSRSNPTPWSE 574


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 444 PELANRIHEKLKN 482
           P+ A  +HEKL+N
Sbjct: 177 PQQAQEVHEKLRN 189


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +1

Query: 400 SPLNHTXTDTTRQGILNWPIEYTKNLKTP 486
           SP  H  +   RQ  LNW        +TP
Sbjct: 340 SPSTHNMSPWVRQVFLNWMPRLLMMRRTP 368


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 265 QEYSSPACSLSPNSGRGPPP 206
           Q   +P     PN  +GPPP
Sbjct: 29  QSPQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,884
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)