Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0764.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic ring...    34   0.071
At5g42920.2 68418.m05233 expressed protein                             29   2.7  
At5g42920.1 68418.m05232 expressed protein                             29   2.7  
At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.1  
At1g26770.1 68414.m03259 expansin, putative (EXP10) similar to e...    27   8.1  

>At4g15093.1 68417.m02319 catalytic LigB subunit of aromatic
           ring-opening dioxygenase family contains Pfam PF02900:
           Catalytic LigB subunit of aromatic ring-opening
           dioxygenase
          Length = 269

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 354 FHPVNTT---DLYFDYYXFPPESYXYRYDAPGNPELANRIHEKLKNSGIDSKLD 506
           F  VNT    +   D+  FP   Y  +Y+APG  EL  R+ E L   G   ++D
Sbjct: 55  FPSVNTVLRNNTIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVD 108


>At5g42920.2 68418.m05233 expressed protein
          Length = 819

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 292 PKRIESDNTGHSALGGRRRYHFIR*TPPIYTLTTTASPL---NHTXTDTTRQGILNWPIE 462
           P+ +E D  G S + G+  +  IR    + +L T A+ L   NHT +  + Q        
Sbjct: 544 PEPMEIDVDGRS-ISGKEDFESIREDGELPSLVTAAASLTSSNHTPSKVSNQARSRQLAL 602

Query: 463 YTKNLKTPV 489
            TKNL +P+
Sbjct: 603 MTKNLDSPI 611


>At5g42920.1 68418.m05232 expressed protein
          Length = 702

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 292 PKRIESDNTGHSALGGRRRYHFIR*TPPIYTLTTTASPL---NHTXTDTTRQGILNWPIE 462
           P+ +E D  G S + G+  +  IR    + +L T A+ L   NHT +  + Q        
Sbjct: 427 PEPMEIDVDGRS-ISGKEDFESIREDGELPSLVTAAASLTSSNHTPSKVSNQARSRQLAL 485

Query: 463 YTKNLKTPV 489
            TKNL +P+
Sbjct: 486 MTKNLDSPI 494


>At1g45180.1 68414.m05180 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 645

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 289 HMLFNFVSQEYSSPACSLSPNSGRGPPPWLTNRAGATVAIVLKVPVE 149
           H L NF SQ  ++PA  + P S R    W T+   A ++     PV+
Sbjct: 294 HALGNFASQNPNAPATHMPPVS-RNTFQWNTSPVAAVISSSSATPVD 339


>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 461

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 619 ASLDLDCSKRIFVLWXMSCRGINQKHRNENSVVXTSFGSNLESIPEF-LSFSCILLANSG 443
           A+ ++  +K  F    MSC G  Q+ +N NSV+  SFGS +  I E  +    + L  SG
Sbjct: 255 ATNNITITKTSFWEEDMSCLGWLQE-QNPNSVIYISFGSWVSPIGESNIQTLALALEASG 313

Query: 442 FP 437
            P
Sbjct: 314 RP 315


>At1g26770.1 68414.m03259 expansin, putative (EXP10) similar to
           expansin At-EXP1 GI:1041702 from [Arabidopsis thaliana];
           alpha-expansin gene family, PMID:11641069
          Length = 249

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 375 RWCLPDEMVTTSSSQCAVTSIIAFNS 298
           +WCLP  +V T+++ C   + +A N+
Sbjct: 88  KWCLPGSIVVTATNFCPPNNALANNN 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,744
Number of Sequences: 28952
Number of extensions: 232776
Number of successful extensions: 676
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)