Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0763.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 54 2e-08
SPAC105.02c |||ankyrin repeat protein, unknown biological role|S... 27 1.6
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 1.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 3.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.8
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 6.3
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 8.4
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 8.4
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 25 8.4
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 54.0 bits (124), Expect = 2e-08
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Frame = -2
Query: 507 DVGPWYVDRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQS 328
D G Y R+R+EVQ+VR RDPI K+ I+ + ++LK+I+ ++R VDE + +
Sbjct: 313 DPGTTY--RSREEVQKVRAARDPIEGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIA 370
Query: 327 KTEP-EVGIEE-LSADIYYKNLEP 262
+ P IEE L +D+Y EP
Sbjct: 371 EESPFPDPIEESLFSDVYVAGTEP 394
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 596 KAARXAIEYCNAGKGPLVMEMETVPLLWSSMSDPG 492
+A++ A +Y PL+ME T SMSDPG
Sbjct: 281 QASKFAKKYTVENSQPLLMEFVTYRYGGHSMSDPG 315
>SPAC105.02c |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 170
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 478 RPIDIPGSDIDDQSNGTVSISITKGPFPALQYS 576
RPID+ D D V S +GP PALQYS
Sbjct: 123 RPIDLVPGDFHD-----VFASALEGPAPALQYS 150
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 58 AVTKINNFYQRYCHINATVKKNN 126
A+ KINN+ R+ H+N+ KK+N
Sbjct: 126 AIVKINNYNSRFSHVNS--KKSN 146
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -2
Query: 474 DEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEEL 295
+E + +R+ P+ S + +L+ +T Q D D + +VD+ QS T+P +
Sbjct: 838 EERRPIRRLWWPLRSIRRSLLSQ--LTGHQ-GDYDENIHNDVDKDMNQSSTQPRDPDADH 894
Query: 294 SADIYY 277
+ +Y+
Sbjct: 895 PSSLYH 900
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 34 KSKVTYCVAVTKINNFYQRY 93
+ K CV +TK+ NFY+ Y
Sbjct: 71 QKKFADCVLLTKVGNFYEMY 90
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = -3
Query: 299 SCPPIYTTRTWNPSSWHPPGCPAQTP*GPTSQPLKP 192
S PPI + PSS PP PA P S P P
Sbjct: 156 SAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 414 LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELS 292
LN++ + + +AK ++ V+E TKQ + + + + ELS
Sbjct: 178 LNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELS 218
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = -2
Query: 495 WYVDRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEP 316
+Y +T Q+ R+++ E++L+ + +L+ +RK++ E K+ K
Sbjct: 7 YYYTQTTIPTQQKRKSKK-----MEELLSKQREECKELQSKITNLRKQLKEGNKKQKRAL 61
Query: 315 EVGIEELSADIYYKN 271
+ I ++ AD+ K+
Sbjct: 62 QQKISQMEADLSQKH 76
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 8.4
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -2
Query: 471 EVQEVRQTRDPITSFKEKILNHELVTPDQLK-----DIDAKVRKEVDEATKQSK-TEPEV 310
+VQE + P+ KE L EL PD LK DI+A+++ SK T P +
Sbjct: 55 DVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPI 114
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 240 AGWMPGRRVPSSCSIYRRTTLQYRLPVP 323
AGWMP VP ++ + T + + P
Sbjct: 47 AGWMPNTPVPCKITVTPQRTFTFTIHTP 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,065
Number of Sequences: 5004
Number of extensions: 46558
Number of successful extensions: 159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -