Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0763.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 70 1e-12
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 63 1e-10
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 35 0.043
11_06_0437 - 23533218-23536382 31 0.92
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 29 2.1
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 29 3.7
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936... 28 4.9
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 28 4.9
03_02_0778 - 11123820-11124242,11125196-11125201 28 6.5
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 28 6.5
06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233... 27 8.6
03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 27 8.6
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/78 (44%), Positives = 49/78 (62%)
Frame = -2
Query: 507 DVGPWYVDRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQS 328
D G Y RTRDE+ VRQ RDPI ++ IL H+L T +LKD++ ++RKEVD+A ++
Sbjct: 296 DPGSTY--RTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKA 353
Query: 327 KTEPEVGIEELSADIYYK 274
K P EL ++Y K
Sbjct: 354 KESPMPDTSELFTNVYVK 371
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 596 KAARXAIEYCNAGKGPLVMEMETVPLLWSSMSDPG 492
+A + A E+ A GP+V+EM+T SMSDPG
Sbjct: 265 QACKFAKEHAIAN-GPIVLEMDTYRYHGHSMSDPG 298
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 63.3 bits (147), Expect = 1e-10
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = -2
Query: 507 DVGPWYVDRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQS 328
D G Y RTRDE+ +RQ RDPI ++ +L H+ T +LKD++ ++RK+VD A ++
Sbjct: 304 DPGSTY--RTRDEIAGIRQERDPIERVRKLLLAHDFATTQELKDMEKEIRKQVDTAIAKA 361
Query: 327 KTEPEVGIEELSADIYYKN--LEPF 259
K P EL ++Y + LE F
Sbjct: 362 KESPMPDPSELFTNVYVNDCGLESF 386
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 554 GPLVMEMETVPLLWSSMSDPG 492
GP+++EM+T SMSDPG
Sbjct: 286 GPIILEMDTYRYHGHSMSDPG 306
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = -2
Query: 483 RTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGI 304
R DE++ R RDPI+ +++ + + + ++ VR+E+ +A + ++ P+ +
Sbjct: 427 RPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPL 486
Query: 303 EELSADIY 280
EL D+Y
Sbjct: 487 AELFTDVY 494
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 30.7 bits (66), Expect = 0.92
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 405 ELVTPDQL-KDIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYKNLEPFVLA 250
+LV P+ + +D+ RK VD K + ++ +E ADI +K EP+ LA
Sbjct: 166 KLVEPNLVGRDVVHACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPYKLA 218
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 596 KAARXAIEYCNAGKGPLVMEMETVPLLWSSMSDP 495
+ A+ AIE G+GP ++E ET S++DP
Sbjct: 294 EVAKEAIERARRGEGPTLVECETYRFRGHSLADP 327
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 474 DEVQEVRQTRDPITSFKEKI-LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEE 298
++ VR R T F E + ++ +++ +++K KE K + E GIE
Sbjct: 105 EQKPNVRYMRQITTKFSESMDISQQVIQQAHFVKMESKKEKEYFSVKKCQELAFECGIEH 164
Query: 297 LSADIY 280
SA++Y
Sbjct: 165 DSAEVY 170
>08_02_0274 -
15192670-15192983,15193110-15193200,15193295-15193603,
15193859-15193944,15196034-15196088,15196689-15196757,
15197027-15197074,15198090-15198203,15198464-15198526,
15199236-15199427,15199519-15199643,15199723-15199779,
15200209-15200332,15200478-15200543,15200656-15200738,
15200916-15201036,15201663-15201773,15201841-15201936,
15202032-15202107,15202878-15203016,15203283-15203346,
15203454-15203527,15203845-15203923,15204473-15204547
Length = 876
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 483 RTRDEVQEVRQTRDPITSFKEKILN-HELVTPDQLKDIDAKVR 358
RTRDE+ +V++ +D +T +K+ + E PD +I V+
Sbjct: 546 RTRDELMDVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVK 588
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 502 RTLVCRSDEGRGTGGEADQGPHHF--VQGEDLESRARHAR 389
++ + R GRGTGGE PH V G + SRAR R
Sbjct: 108 KSTLLRILSGRGTGGEIAARPHAVVSVNGRAVTSRARLRR 147
>03_02_0778 - 11123820-11124242,11125196-11125201
Length = 142
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 438 WGPWSASPPVPRPSSDR 488
WGPW+A+ P P P R
Sbjct: 8 WGPWAAARPEPPPPKGR 24
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -2
Query: 474 DEVQEVRQTRDPITSFKEKILNHE---LVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGI 304
D RQ D + K +N E V PD+ +++A++ + +EATK+ + V
Sbjct: 288 DRANAFRQHHDLFQQKEYKGVNLEKLKFVNPDKFSELEAELTADSEEATKRFEHIVAVMN 347
Query: 303 EELS 292
EEL+
Sbjct: 348 EELA 351
>06_01_0321 +
2328932-2328963,2329084-2329243,2329388-2329576,
2330406-2330517,2331395-2331474,2332022-2332132,
2332580-2332666,2332979-2333260,2333804-2333965
Length = 404
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 411 NHELVTPDQ-LKDIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYKNLEP 262
N ELV D+ K + +K+VD + KT P GIE +D+ K P
Sbjct: 156 NKELVESDEDQKKPHKEHQKQVDRS--HIKTSPSAGIEAKHSDVTSKQFSP 204
>03_02_1023 +
13265179-13265330,13265526-13265637,13265752-13266048,
13266361-13266623,13267637-13267847,13268420-13268590,
13268671-13268748,13269275-13269520,13269763-13271868,
13272122-13273904,13274113-13274216,13274752-13275108,
13275210-13275328,13276175-13276436,13276669-13276893,
13277075-13277214,13278087-13278159,13278431-13278532,
13278647-13279018,13279183-13279230,13279516-13279900,
13280440-13280558
Length = 2574
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 468 VQEVRQ-TRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQ 331
V E+R R P+T ILNH + Q+ D+D +R+ A K+
Sbjct: 96 VGEIRLGLRRPLTQLGFTILNHGPILQLQISDLDIVLRQPAKSAKKK 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,849
Number of Sequences: 37544
Number of extensions: 326040
Number of successful extensions: 1114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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