Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0763.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                       70   1e-12
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   0.73 
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_17781| Best HMM Match : RVT_1 (HMM E-Value=1.3e-24)                 30   1.6  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                29   2.2  
SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)                29   3.8  
SB_39899| Best HMM Match : rve (HMM E-Value=5.9e-27)                   29   3.8  
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_3315| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)                   29   3.8  
SB_25474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)                 29   3.8  
SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)                  29   3.8  
SB_57908| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               27   8.7  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 29/68 (42%), Positives = 48/68 (70%)
 Frame = -2

Query: 483 RTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGI 304
           R+RDE+Q VR+TRDPIT  +EK+L+  L + D +K I+ + + E+DEA + +K +PE  +
Sbjct: 263 RSRDEIQSVRKTRDPITGLREKLLDSGLASTDDIKKIEQEAKAEIDEAVECAKNDPEPPL 322

Query: 303 EELSADIY 280
           ++L   +Y
Sbjct: 323 DDLFMHVY 330



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = -3

Query: 596 KAARXAIEYCNAGKGPLVMEMETVPLLWSSMSDPGMS 486
           +A + A++Y  +GKGP++ME++T      SMSDPG S
Sbjct: 225 EATKWAVDYARSGKGPILMELKTYRYYGHSMSDPGTS 261


>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 25.8 bits (54), Expect(2) = 0.73
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 246 WMPGRRVPSSCSIYRR 293
           W+P RR+PS C   RR
Sbjct: 244 WLPSRRLPSGCLPSRR 259



 Score = 23.8 bits (49), Expect(2) = 0.73
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 240 AGWMPGRRVPS 272
           +GW+P RR+PS
Sbjct: 207 SGWLPSRRLPS 217


>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1744

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 13   IVMFTLPKS--KVTYCVAVTKINNFYQRYCHINATVKK 120
            IV+   PKS  K+  CV + + N   +R CH+  T+K+
Sbjct: 943  IVVAPKPKSPGKIRVCVDMRQANKAIKRECHVTPTIKE 980


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = -2

Query: 573  VLQRRERSFXXXXXXGTVTLVIDVGPWYVDRTRDEVQEVRQTRDPITSFKEKILNHELVT 394
            VL++  +          V  V+DV     DR+ +++ E+   R  I   ++ I+N E   
Sbjct: 1208 VLRKEIKQCQDQMEANAVATVVDVHCQLADRSHEQLLEITALRAKIMEMRDSIMNQEKEL 1267

Query: 393  PDQLKDIDAKVRKEV 349
             +++K   A + +E+
Sbjct: 1268 REKIKKDFANLVQEL 1282


>SB_17781| Best HMM Match : RVT_1 (HMM E-Value=1.3e-24)
          Length = 460

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 13  IVMFTLPKS--KVTYCVAVTKINNFYQRYCHINATVKK 120
           IV+   PKS  K+  CV + + N   +R CH+  T+K+
Sbjct: 93  IVVAPKPKSPGKIRVCVDMRQANKAIKRECHVTPTIKE 130


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -3

Query: 281 TTRTWNPSSWHPPGCPAQTP*GPTSQPLKPQYRLYLH 171
           TT T NPS   P G PA T   PT  P     RL +H
Sbjct: 634 TTTTGNPSP--PQGQPATTTGNPTPSPNHNDLRLIIH 668


>SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)
          Length = 352

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 290 PIYTTRTWNPSSWHPP-GCPAQTP*GPTSQPLKP 192
           P      WNP+ W+P  G P   P     QP++P
Sbjct: 87  PSMEPHVWNPNLWNPMYGTPCMEPQRMEPQPMEP 120


>SB_39899| Best HMM Match : rve (HMM E-Value=5.9e-27)
          Length = 427

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P  TTR   PS +HP   P Q P
Sbjct: 219 EDLAKSCGPCNTTRNAPPSQYHPWAYP-QAP 248


>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P  TTR   PS +HP   P Q P
Sbjct: 422 EDLTKSCGPCNTTRNAPPSQYHPWAYP-QAP 451


>SB_3315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P  TTR   PS +HP   P Q P
Sbjct: 106 EDLAKSCGPCNTTRNAPPSQYHPWAYP-QAP 135


>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
          Length = 566

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P  TTR   PS +HP   P Q P
Sbjct: 302 EDLAKSCGPCNTTRNAPPSQYHPWAYP-QAP 331


>SB_25474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P  TTR   PS +HP   P Q P
Sbjct: 269 EDLAKSCGPCNTTRNAPPSQYHPWAYP-QAP 298


>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
          Length = 1122

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314  KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
            + + KSC P  TTR   PS +HP   P Q P
Sbjct: 1002 EDLAKSCGPCNTTRNAPPSQYHPWAYP-QAP 1031


>SB_9257| Best HMM Match : RVT_1 (HMM E-Value=9.1e-32)
          Length = 1086

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P  TTR   PS +HP   P Q P
Sbjct: 818 EDLAKSCGPCNTTRNAPPSQYHPWAYP-QAP 847


>SB_57908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 378 DIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYKNLEPFVLAST-RLPRSNTLRSN 211
           D DAKV   V  +   S+    VG   +   ++Y   E  V +ST  +P S     N
Sbjct: 2   DDDAKVSNSVTSSRNPSRRSSRVGSVSIEPKLFYVEEEDSVFSSTENIPDSTNSEPN 58


>SB_20716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 314 KSVLKSCPPIYTTRTWNPSSWHPPGCPAQTP 222
           + + KSC P   TR  +PS +HP   P Q P
Sbjct: 81  EDLAKSCGPCNATRNASPSQYHPWAYP-QAP 110


>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 22  FTLPKSKVTYCVAVTKINNFYQRYCHINATVKKNNKSVN 138
           F +P +   Y V  +K+N F + Y H N       KS+N
Sbjct: 558 FLIPDNVFLYPVKKSKVNTFAEFYDHWNNYSSTTTKSIN 596


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
 Frame = -2

Query: 513  VIDVGPWYVDRTRDEVQEVRQTRDPITSFK--EKILNHELVTPDQ----LKDIDAKVRKE 352
            +++ G   VD+T ++ +++ + R  I   K  E+ +  +L   D+    +KD  + +++E
Sbjct: 896  LLEGGKSIVDKTSEQERDLERKRQEIAEHKRQEREMLQKLEAKDEDTIEIKDTYSNLQQE 955

Query: 351  VDEATKQSK 325
            VD  TK+ K
Sbjct: 956  VDVKTKKLK 964


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 266 NPSSWHPPGCPAQTP*GPTSQPLKPQY 186
           +PSS + P  P+ +P  P+  P  P Y
Sbjct: 444 SPSSGYSPASPSYSPTSPSYSPTSPSY 470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,794,037
Number of Sequences: 59808
Number of extensions: 370545
Number of successful extensions: 1183
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)