Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0763.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.98 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 293 DNSSIPTSGSVFDCLVASSTSLRTL 367
           DN   P  G+VF  L++  T LRTL
Sbjct: 513 DNRRRPNPGTVFARLLSVLTELRTL 537


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 173 VNIIYIEVLVVARLDLKVFERGSRVDA 253
           ++++Y+E+ +  R  L+   R SR++A
Sbjct: 212 MSLVYLEIYLATRRRLRERARQSRINA 238


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 173 VNIIYIEVLVVARLDLKVFERGSRVDA 253
           ++++Y+E+ +  R  L+   R SR++A
Sbjct: 212 MSLVYLEIYLATRRRLRERARQSRINA 238


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 173 VNIIYIEVLVVARLDLKVFERGSRVDA 253
           ++++Y+E+ +  R  L+   R SR++A
Sbjct: 212 MSLVYLEIYLATRRRLRERARQSRINA 238


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 294 SADIYYKNLEPFV 256
           S  +YY N+EPF+
Sbjct: 273 SHSLYYVNMEPFM 285


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 266 NPSSWHPPGCPAQTP*GPTSQP 201
           NPS   PPG P   P  P+  P
Sbjct: 41  NPSQGPPPGGPPGAP--PSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 394 ARSAQGYRRQGT 359
           AR+AQGY  +GT
Sbjct: 563 ARNAQGYSARGT 574


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 444 DPITSFKEKILNHELVTPD 388
           D + ++K KIL    ++PD
Sbjct: 733 DTVLAYKPKILGKPTISPD 751


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 293 PPIYTTRTWNPSSWHP 246
           PP Y     +PS +HP
Sbjct: 313 PPSYHPHQHHPSQYHP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,348
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)