Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0762.Seq
(558 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 111 3e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 99 2e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 9e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 4e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.28
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 31 0.48
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 31 0.64
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.64
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 31 0.64
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.5
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.5
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 4.5
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 7.9
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2) 27 7.9
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 111 bits (268), Expect = 3e-25
Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 436 TRXHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 534
TR HA+L +LGV QLIV +NK+D L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 99.1 bits (236), Expect = 2e-21
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 436 TRXHALLAFTLGVKQLIVGVNKMD 507
TR HA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293
Score = 44.0 bits (99), Expect = 8e-05
Identities = 17/41 (41%), Positives = 29/41 (70%)
Frame = +2
Query: 125 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERER 247
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK 206
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 9e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 187
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 4e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 363
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +2
Query: 185 MGKGSFKYAWVLDKLKAERER 247
MGKGSFKYAWVLDKLKAERER
Sbjct: 1 MGKGSFKYAWVLDKLKAERER 21
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 33.9 bits (74), Expect = 0.091
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVK 477
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 478 QLIVGVNKMD 507
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N T V +++
Sbjct: 136 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATRLVPSISA 192
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + + +F D T N T V +++
Sbjct: 1030 RTASTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N T V +++
Sbjct: 1432 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATRLVPSISA 1488
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFV 125
RT+ F TT+T S YPS+ + + +F +D T N T V
Sbjct: 25 RTTSTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSVVVDSTTPNATRLV 76
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N T V +++
Sbjct: 1633 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATRVVPSISA 1689
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N T V +++
Sbjct: 829 RTTSTSAVFPTTITPSPNITSYPSLTTSAVGNFTSATSVVFDSTTPNATRLVPSISA 885
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 307 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVKQLI 486
+D PGH + M+ G + D A+L++A QT H + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 487 VGVNKMD 507
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 31.1 bits (67), Expect = 0.64
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 280 RTSREQYRFDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 110
RT+ F TT+T S YPS+ + +F D T N TT V +++
Sbjct: 209 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTPVPSISA 265
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIV 387
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 56 THINIVVIGHVDSGKSTTTGHLIY 127
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/61 (36%), Positives = 27/61 (44%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 245 R 247
R
Sbjct: 1987 R 1987
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/85 (24%), Positives = 32/85 (37%)
Frame = +1
Query: 262 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 441
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 442 XHALLAFTLGVKQLIVGVNKMDSLN 516
A GV +I +NK+D N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 349 TGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVKQLIVGVNKMDSLNHHTV 528
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ +++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMN-EDSTSELLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 529 S 531
+
Sbjct: 849 A 849
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 441
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143
>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
Length = 207
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 367 DCAVLIVAAGTGEFEAGISKNGQTRXHAL 453
DC +L V +GTG G+ K+G T AL
Sbjct: 67 DCRILDVGSGTGLQAEGLVKHGFTNIDAL 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,696,175
Number of Sequences: 59808
Number of extensions: 331409
Number of successful extensions: 810
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -