Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0762.Seq
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 164 4e-41
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 164 4e-41
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 148 3e-36
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 101 4e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 67 9e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 67 9e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 64 5e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 64 5e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 64 5e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 40 0.001
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.046
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.060
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.18
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.18
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.32
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.43
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 31 0.43
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.56
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.56
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 31 0.74
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 31 0.74
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.7
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.7
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 6.9
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 164 bits (398), Expect = 4e-41
Identities = 77/85 (90%), Positives = 80/85 (94%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 TRXHALLAFTLGVKQLIVGVNKMDS 510
TR HALLA TLGVKQLIV NKMDS
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDS 157
Score = 148 bits (358), Expect = 3e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 510 TEPPYSEPRFEEIKKE 557
TEPP+SE RF EI E
Sbjct: 158 TEPPFSEARFTEITNE 173
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 164 bits (398), Expect = 4e-41
Identities = 77/85 (90%), Positives = 80/85 (94%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 TRXHALLAFTLGVKQLIVGVNKMDS 510
TR HALLA TLGVKQLIV NKMDS
Sbjct: 133 TREHALLAQTLGVKQLIVACNKMDS 157
Score = 148 bits (358), Expect = 3e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 510 TEPPYSEPRFEEIKKE 557
TEPP+SE RF EI E
Sbjct: 158 TEPPFSEARFTEITNE 173
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 153 bits (370), Expect = 1e-37
Identities = 79/100 (79%), Positives = 83/100 (83%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 TRXHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRR 555
TR HALLA TLGVKQL+ SL T SPD SRR
Sbjct: 133 TREHALLAQTLGVKQLV-------SLRSPTRSPD--SSRR 163
Score = 148 bits (358), Expect = 3e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 148 bits (358), Expect = 3e-36
Identities = 68/69 (98%), Positives = 68/69 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 390
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 510 TEPPYSEPRFEEIKKE 557
TEPP+SE RF EI E
Sbjct: 124 TEPPFSEARFTEITNE 139
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAER 241
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 112 bits (269), Expect = 2e-25
Identities = 52/87 (59%), Positives = 65/87 (74%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 436 TRXHALLAFTLGVKQLIVGVNKMDSLN 516
T+ HALL +LGV QLIV VNK+D+++
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKLDTVD 322
Score = 85.0 bits (201), Expect = 3e-17
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 229
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 230 KAERER 247
+ ERER
Sbjct: 227 EEERER 232
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 112 bits (269), Expect = 2e-25
Identities = 52/87 (59%), Positives = 65/87 (74%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 436 TRXHALLAFTLGVKQLIVGVNKMDSLN 516
T+ HALL +LGV QLIV VNK+D+++
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKLDTVD 340
Score = 85.0 bits (201), Expect = 3e-17
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 229
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 230 KAERER 247
+ ERER
Sbjct: 245 EEERER 250
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 101 bits (242), Expect = 4e-22
Identities = 44/84 (52%), Positives = 60/84 (71%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 436 TRXHALLAFTLGVKQLIVGVNKMD 507
TR H++L T GVK L++ VNKMD
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKMD 258
Score = 79.8 bits (188), Expect = 1e-15
Identities = 34/68 (50%), Positives = 49/68 (72%)
Frame = +2
Query: 44 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 223
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 224 KLKAERER 247
ERE+
Sbjct: 164 TNDEEREK 171
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 66.9 bits (156), Expect = 9e-12
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 436 TRXHALLAFTLGVKQLIVGVNKMD 507
T+ H +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTT 112
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 66.9 bits (156), Expect = 9e-12
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 435
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 436 TRXHALLAFTLGVKQLIVGVNKMD 507
T+ H +LA +GVK + + +NK D
Sbjct: 149 TKEHLILAKQVGVKNMAIFINKAD 172
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTT 112
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 274 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHAL 453
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTR H L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 454 LAFTLGV--KQLIVGVNKMDSL 513
LA +GV ++V +NK+D +
Sbjct: 159 LARQVGVPLDNIVVFMNKVDEV 180
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 274 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHAL 453
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTR H L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 454 LAFTLGV--KQLIVGVNKMDSL 513
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.5 bits (150), Expect = 5e-11
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 274 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHAL 453
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTR H L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 454 LAFTLGV--KQLIVGVNKMDSL 513
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.015
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/86 (29%), Positives = 43/86 (50%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVK 477
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT H LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 478 QLIVGVNKMDSLNHHTVSPDLRKSRR 555
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTT 112
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/73 (39%), Positives = 33/73 (45%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVK 477
VT +D PGH F G AD VL+VAA G E QT A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 478 QLIVGVNKMDSLN 516
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.046
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLG 471
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 472 VKQLIVGVNKMD 507
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 181
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGID 145
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 27.9 bits (59), Expect = 5.2
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVK 477
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 478 QLIVGVNKMD 507
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.9 bits (69), Expect = 0.32
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGVKQL 483
IID PGH F G+S D A+L+V + G+ QT +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QT-IESLKLLIKGKTPF 604
Query: 484 IVGVNKMDSLNHHTVSP 534
++ +NK+D L + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRXHALLAFTLGV 474
+V+ +D PGH + M+ G + D A L+VA QT H + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 475 KQLIVGVNKMD 507
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.43
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 500 LFTPTMSCLTPRVKASKACXRV*PFLEIPASNSPVPAATMSTA 372
LF PT+SC+ + AS P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 17 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 127
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.56
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 17 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 127
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.7 bits (66), Expect = 0.74
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 256 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 402
+ I + Y + IID PGH +F M AD V++V A G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 143 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 143 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTT 112
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 298 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 393
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 483 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 325
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 324 VSRSINDGNI 295
S S +D I
Sbjct: 84 FSGSKSDAEI 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,069
Number of Sequences: 27780
Number of extensions: 248101
Number of successful extensions: 718
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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