Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0761.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    29   0.44 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.58 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   4.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   4.1  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   4.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   4.1  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.4  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   9.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   9.4  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 506 IEGNQDPVTKALPDSHPQPIRRAPTVPAAP 417
           IEG+ D V K LP     P  +AP  P AP
Sbjct: 367 IEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = -2

Query: 488 PVTKALPDSHPQP-------IRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 330
           PV    P  H  P       +  AP  PAAP+ P+A P   Q     ++P A+ V +  P
Sbjct: 521 PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--P 577

Query: 329 PLRLVFPGV 303
           P+  V P V
Sbjct: 578 PVAPVAPEV 586


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 203 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 102
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 488 PVTKALP-DSHPQPI-RRAPTVPA-APIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 324
           P T A P  S P P    AP +P+ AP  P + P  AQP   V   P A  +   +PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 436 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 341
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 491 DPVTKALPDSHPQPIRRAPTVPAAPIPPQAR 399
           D V K  PD  P+   R PT+P   I   +R
Sbjct: 376 DGVPKPTPDGFPRRFERDPTIPPDSIKVYSR 406


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 455 QPIRRAPTVPAAPIPPQARPGQ 390
           +P+ R P +P  P+P +  PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 488 PVTKALPDS--HPQPIRRAPTVPAAPIPPQARPGQAQP 381
           P  ++ P +   P P+  +  V   P PP A PG++ P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 488 PVTKALPDSHPQPIRRAPTVPAAPIPPQA-RPGQAQPLQAV 369
           P+   LP   P      P  PAAP PP A  P  A P+ ++
Sbjct: 454 PIAPPLPAGMPAA---PPLPPAAPAPPPAPAPAPAAPVASI 491


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 464 SHPQPIRRAPTVPAAPIPPQARPGQA 387
           S+P  ++R P +PA P+ P  RP  A
Sbjct: 221 SYPYELQRKPLIPAHPV-PSFRPTSA 245


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 278 YTSLVKEKMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKSY 135
           Y+S+    +P +  ++ Y+   P  Y C I  N+   +P S  DF ++
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS--YLPPSYMDFYTW 486


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 452 PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 318
           P RR   V PAAP+P  A P +  P  A   P+  +     P L L
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
 Frame = -2

Query: 464 SHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRAVQVHRTLPPL 324
           +HP   QPI  AP VPA       PIPPQA P    P      V LP A    +   P+
Sbjct: 230 NHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAANSAVQNAQPV 287


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
 Frame = -2

Query: 488 PVTKALPDSHPQPIRRAPTVPAAP-IPPQARP 396
           P   ALP   P P    P VPA P IP    P
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPGATAP 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,676
Number of Sequences: 5004
Number of extensions: 47700
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)