Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0761.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 35 0.050
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 32 0.35
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 31 0.81
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 3.3
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 4.3
SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 29 4.3
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 4.3
SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 4.3
SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7) 29 4.3
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 29 4.3
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11) 29 4.3
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 29 4.3
SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10) 29 4.3
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05) 29 4.3
SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32) 29 4.3
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 5.7
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 28 5.7
SB_2616| Best HMM Match : Na_trans_assoc (HMM E-Value=2.6) 28 5.7
SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7) 28 7.5
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 28 7.5
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 9.9
SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7) 27 9.9
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 470 PDSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPLR 321
PD P AP +P P+PP+ PG + P + P H PPLR
Sbjct: 461 PDEEKPPPPPAPALPPLPLPPELPGSPGDSPPATSPKQPPLPPKHSNGPPLR 512
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -2
Query: 488 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 327
P T +P++ P +P +P AP+ P P P +A+ P LPP
Sbjct: 203 PPTPPMPETPLPP--GSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 428 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 300
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -2
Query: 488 PVT-KALPDSHPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 324
P+T + + HP P+RR P+ A+ IPP RP ++P++ P + H +LP
Sbjct: 17 PLTYRPMRGEHP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSE 74
Query: 323 RLVFP 309
RL +P
Sbjct: 75 RLDYP 79
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 296 QA*TDFYTSLVKEKMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 153
Q+ +Y VKEK+ H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Frame = -2
Query: 470 PDSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA-----VLLPRAVQVHRTLPPLRLVFP 309
P++ +P ++ P VP + PQA PG P+ A + P A+ + P ++F
Sbjct: 112 PENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFL 171
Query: 308 GVIIQA*TDFYTSLVKEKMP 249
+ T+ S++ + P
Sbjct: 172 TNLPMETTELMLSMLFNQFP 191
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 434 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 327
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 488 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
P + P P P P+ P P+ P+ RP +QP
Sbjct: 45 PPLREPPTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.1 bits (62), Expect = 3.3
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -2
Query: 488 PVTKALPDS-HPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPL 324
P KA P S P P R P+ P A PIPP +P ++P P + +PP
Sbjct: 1029 PKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPP 1088
Query: 323 R 321
R
Sbjct: 1089 R 1089
>SB_56858| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 100
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 45 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 84
>SB_52167| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
Length = 287
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 232 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 271
>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 204 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 243
>SB_35595| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 214
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 159 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 198
>SB_34667| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 185 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 224
>SB_32994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 607 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 646
>SB_23956| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 185 QANNDPVSSCMPDASSQAPQPLPE-PKRPTRARTRPKRYEP 224
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 488 PVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 309
P A P +P P PP A+P A P AV PR T PP V
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAAPYGAV--PRPGAPAATAPPGAPVGR 772
Query: 308 GVI 300
G++
Sbjct: 773 GIL 775
>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
Length = 1213
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 1158 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 1197
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 28.7 bits (61), Expect = 4.3
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = -2
Query: 500 GNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQ----AQPLQAVLLPRAVQVHRTL 333
G +P ++P S+P P VP P+PP A PG QP+Q LP + +
Sbjct: 33 GGFNPPPSSVPVSYPGPPPAMYAVPGMPMPP-AYPGMPTYPPQPMQ--FLPGTLP---GM 86
Query: 332 PPLRLVFPGVIIQA*TDFYTSLVKEKMPLLRKHIRYSLPSP 210
PP + + QA T F V PL+ + + + SP
Sbjct: 87 PPPPMFAQMMAPQAMT-FQPMPVSATAPLVTQGLTQATSSP 126
>SB_7962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 1214 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 1253
>SB_2435| Best HMM Match : WD40 (HMM E-Value=4.1e-10)
Length = 1272
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 1217 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 1256
>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 620 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 659
>SB_33158| Best HMM Match : rve (HMM E-Value=7.5e-05)
Length = 848
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 793 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 832
>SB_769| Best HMM Match : Retrotrans_gag (HMM E-Value=0.32)
Length = 500
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV+ +PD+ Q + P P P + RP + +P
Sbjct: 445 QANNDPVSSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 484
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -2
Query: 500 GNQDPVTKALPDSHPQPIRRAPTVP----AAPIPPQARPGQAQP 381
G Q P + + P P R AP P +AP PP AR G A P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPP 327
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Frame = -2
Query: 497 NQDPVTKALPDSHPQP------IRRAPTVPAAPIPPQARP 396
N DP P S P+P IRR P P PPQ+ P
Sbjct: 109 NNDPTLPTPPFSTPRPRPKAKRIRRLLPTPPPPTPPQSTP 148
>SB_2616| Best HMM Match : Na_trans_assoc (HMM E-Value=2.6)
Length = 252
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 313 FQESSFRREQTFTQAWSRKKCLCFENIFDIPYHLRKNI 200
F S +++ + Q +KK L NIF IP + RKN+
Sbjct: 180 FYSSLYKKSSSPLQDSFKKKFLLNPNIFKIPEYSRKNV 217
>SB_40649| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 240
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV +PD+ Q + P P P + RP + +P
Sbjct: 185 QANNDPVPSCMPDASSQ-APQPPHEPRRPTRARTRPKRYEP 224
>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/42 (30%), Positives = 16/42 (38%)
Frame = -2
Query: 485 VTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 360
+TKA P + P P + PT P P P Q P
Sbjct: 15 LTKATPQTTPTPTKPTPTTHTPTKPSPTTPTSTAPTQTTPTP 56
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2
Query: 494 QDPVTKALPDSHPQPIRRA-PTVP-AAPIPPQARPGQAQPLQAVLLP 360
+ P+ P P R + P VP A+P PP ARP P + + P
Sbjct: 34 EPPIDVQFTSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 428 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPG 306
P PIP QA PGQA P + P VQ + + P FPG
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPG 43
>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -2
Query: 485 VTKALPDSHPQPIRRAPTVPA----APIPPQARPGQAQPLQAVLLP 360
VT P + P P + P PA AP+PP P P A L P
Sbjct: 743 VTTKSPPAPPLPPKVTPKPPAPPQFAPVPPPCAPIPPMPCSAPLPP 788
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 443 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 327
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_42307| Best HMM Match : AT_hook (HMM E-Value=3.7)
Length = 269
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 503 EGNQDPVTKALPDSHPQPIRRAPTVPAAPIPPQARPGQAQP 381
+ N DPV +PD+ Q + P P P + RP + +P
Sbjct: 214 QANNDPVFSCMPDASSQAPQPLPE-PRRPTRARTRPKRYEP 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,872
Number of Sequences: 59808
Number of extensions: 361993
Number of successful extensions: 1233
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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