Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0760.Seq
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62770.1 68414.m07085 invertase/pectin methylesterase inhibit...    28   5.4  

>At1g62770.1 68414.m07085 invertase/pectin methylesterase inhibitor
           family protein similar to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143, Phaseolus vulgaris SP|Q43111; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 204

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +2

Query: 59  NXPKLLKMKLIIVXAXALGATVIXAPXTEDYPKIVRSEFDASPD 190
           N   L +  LII  A A   T+  A  T++ PK  R E+ A  D
Sbjct: 62  NDQDLAQTALIISLARAKSVTIFVAKLTKETPKFKRREYLAIKD 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,785,133
Number of Sequences: 28952
Number of extensions: 102437
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)